Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq552 120 8e-23 >seq552 Length=31981 Score = 120 bits (132), Expect = 8e-23 Identities = 323/486 (66%), Gaps = 15/486 (3%) Strand=Plus/Plus Query 4770 CAGTTCGGGCTGACCGATCAGGATGATGCTGAGCAGCTTGTCAAATCCGTCCTCGAACTG 4829 ||||||||| || || | ||||| |||| ||||| || | ||| || || || | || Sbjct 3881 CAGTTCGGGTTGTCCCAGCAGGACGATGGACAGCAGTTTTTTAAAGCCATCTTCCAGCTC 3940 Query 4830 ATCGCGCATGCGCTTGAGGTGGTTGAGGGTCTGGGTCGGGATCGAGTGCGCCTCTTCTAT 4889 | | | ||| |||||||| || | |||| || | || | | || || ||||| || Sbjct 3941 AAAG---AAGCGTTTGAGGTGCTTTAAGGTCGGGATGGGCAGGCAATGGGCTTCTTCAAT 3997 Query 4890 GATCACGACATGACGGTTGCCGGCGGCGTATGAGTTCTTG--AGGCAGGTGTGGACCTGG 4947 | || ||||| | || |||||| || || |||| | | | ||| | ||| Sbjct 3998 CACCAGTACATGGCTGTACCCGGCG-CGGCTGCTCTCTTTTAATACCCG-GTGTAGCTGA 4055 Query 4948 CGGAAGCGAGCTTCGGGGCTGGACTTAGGTGTTTCCAGCGGTGCCACGGCATACATGATG 5007 || ||||| |||||||| | || || ||||||| || || | || || | || Sbjct 4056 CGAAAGCGGGCTTCGGGTGAGCGTTTGAGTTTTTCCAGTGGGGCTAGGGTATGGACAATA 4115 Query 5008 GCTTCTGCGATGTGAGTCGCTTTCAGGGTCTTGCCCTTGAT-GTCGTTGGCCTCCATGCC 5066 || || |||| | |||||||||||||||||| |||| |||||| |||||||| | Sbjct 4116 GCCTCGGCGAGACTGGCGGCTTTCAGGGTCTTGCCC-TGATGGTCGTTATCCTCCATGGC 4174 Query 5067 AACCACGAAGGGGTCGATGGTTATGACCGGCTCGTT---GCG---AAGACGGTGGGTCAG 5120 | |||| |||| || || | ||||| |||| || || |||| ||||| Sbjct 4175 CAGCACGTAGGGTTCAATAACCACCACCGGGGCGTTTTCCCGATAAATGCGGTCAGTCAG 4234 Query 5121 ATCGCGACGCAGAGTGCTCTTGCCGGCACCGGACTCGCCCACGATGGCGAGGAAGCCGTC 5180 || || | ||| ||||| || || | ||||| || || | | |||| || ||| | Sbjct 4235 GTCACGTCTCAGGGTGCTTTTACCCGAGCCGGATTCCCCGATAACCGCGATAAAACCGCC 4294 Query 5181 ATGGCGTGCGGTTTGGTACATCGATTCGCGGATGTAGCGAATATCGCCGCTGAAATACAT 5240 || ||| ||||| ||||||| || ||||| | || ||| | || | | ||| ||| Sbjct 4295 ATAGCGGGCGGTCTGGTACAACGCCTCGCGCACATAACGACTTTCAGGGGTTAAAAACAC 4354 Query 5241 GTCTTC 5246 ||||| Sbjct 4355 ATCTTC 4360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126573518398410