Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq556 421 2e-113 >seq556 Length=23517 Score = 421 bits (466), Expect = 2e-113 Identities = 972/1443 (67%), Gaps = 40/1443 (3%) Strand=Plus/Minus Query 7663 GCCGACTATATTGATTACCTACCAATCAATATGTTGGCTACACCGAAAGAAGTCCTCAAC 7722 ||||| ||||| || | | || |||||||| ||||||| || || || | || Sbjct 8476 GCCGATTATATCGACGCCTTGCCGGTCAATATGCTGGCTACGCCCAAGCCGGTATTGAAT 8417 Query 7723 TCATCGGGTTATTTACGCTCATTCCCTGGCATAGC--GAAGCGCAACGATGTAAATGGTG 7780 | |||||| ||||||| || || || || || | | ||| || || || | Sbjct 8416 GCCAGCGGTTATCTACGCTCGTTTCCCGGTATTGCCCGCAAAGCA--GAGGTCGCCGGGG 8359 Query 7781 TATCGCGTGGTGTTGAATACAATACCGCTCAGAACGCTGTATATCGCGTTTTAGGCAGCA 7840 | || || || ||| | ||||||||| | | || | || ||||||| | || | Sbjct 8358 TGTCCCGAGGCGTTCAGTACAATACCCATGAAAAGACGGTTTATCGCGGGCTGGGAAATC 8299 Query 7841 AGCTCTACAAAGGGGA--AACCG-TAGTCGGTGATGTAGCCGGAAGCGGTCGCGTATCAG 7897 | | |||||||| | ||||| ||| ||| || | || |||| |||||| ||||| Sbjct 8298 AATTATACAAAGGCCATAAACCGATAG-CGG--ATATTGCTGGAAAGGGTCGC--ATCAG 8244 Query 7898 --TGGCACATGGTCGCACTTCTCAGGCGGTAGGTGTGAACGGTCAGCTCATCGAGTACCG 7955 |||| | | |||| ||||||||||| | | || | | | ||||| Sbjct 8243 CATGGCGTTTAGCCGCAACAGTCAGGCGGTAGCAGCGGCAGGAAAAATGACGCTCTACCG 8184 Query 7956 ATACGATGGCACCGTTAAGACGATGGCAAACTGGCCTGCAGACAGCGGATTCACGCAATA 8015 ||||||||||| || || || ||| ||||||||| ||||| || ||||||||| Sbjct 8183 TTACGATGGCACGGTAAAAACACTGGAAAACTGGCCGAAAGACAAAAAATACACGCAATA 8124 Query 8016 TGAGTTAGGTTCAGTCCGTGACATTACTCGCTTACGTGGGCGTTATGCATGGTCAAAAGA 8075 || | ||| | || || || || | || || || ||||||| |||| ||||| Sbjct 8123 CGATATTGGTACCGTGCGGGATATGTGCCATTTGCGCGGACGTTATGTCTGGTGTAAAGA 8064 Query 8076 CGGTACTGATTCATGGTT--TATCTCTGACCTCGAAGATGAATCCCACCCAGACCGTTAC 8133 ||| || ||| || || | || | || | ||||||||||| ||||| ||||| ||| Sbjct 8063 CGGCACCGAT--ATTTTTGGTGTCACCGATTTGGAAGATGAATCTCACCCTGACCGCTAC 8006 Query 8134 AGCGCCGAATATCGCGCAGAATCACAGCCGGACGGGATTATCGGCATCGGAACGTGGCGA 8193 |||| |||||||| |||||||| || ||||| |||||||| || | | ||||| Sbjct 8005 CGCGCGCTGTATCGCGCCGAATCACAACCCGACGGCATTATCGGTATTGATAGCTGGCGC 7946 Query 8194 GATTTCATCGTCTGCTTTGGTTCGTCAACGATAGAGTATTTCTCCCTGATAGGCGCAACC 8253 ||||| || ||||||||||| |||| || || || ||||| ||||||| || || || Sbjct 7945 GATTTTATTGTCTGCTTTGGCGCGTCCACCATTGAATATTTTTCCCTGACCGGGGCGGCC 7886 Query 8254 ACCGCTGGCGCTGCGT--TGTATGTCGCACAGCCATCGTTGATGGTACAGAAGGGTATTG 8311 || ||| | || | |||| ||||||||| | | ||||| |||| || |||| Sbjct 7885 GACG--GGCAATCCGCCATCTATGCCGCACAGCCTGCACTCATGGTCGAGAAAGGCATTG 7828 Query 8312 CCGGAACATACTGTAAAACGCCATTCGCTAA--CTCATACGCATTCATCAGTCACCCGGC 8369 |||| || |||| || || | ||| | ||||| | ||||||| || | ||| Sbjct 7827 CCGGGACCCACTGCAAGACCCGGCTCGGCGATGCTCATGTGA--TCATCAGCCATCAGGC 7770 Query 8370 TACTGGCGCACCTTCCGTCTACATCATCGGGTCAGG-GCAGGCTTCACCAATTGCGACGG 8428 || ||||| || || || ||| | || ||||| |||||| || | ||||| |||| Sbjct 7769 CACCGGCGCGCCGTCGGTATACCTGATTAA-TCAGGCGCAGGCGACATCGATTGCCACGG 7711 Query 8429 CCAGTATTGAGAAAATTATCCGCTCATACACGGCTGATGAACTGGCAACCGGGGTGATGG 8488 ||| || ||||||||| | ||| ||||| ||||||||||| | || || |||| Sbjct 7710 CCACCATCGAGAAAATTCTACGCAGCTACACACACGATGAACTGGCGAGCGCCGTCATGG 7651 Query 8489 AGACGTTGAGGTTCGACTCTCATGAACTGCTGATTATCCATCTCCCGCGTCATGTGCTGG 8548 | || | | |||||| || ||| | || |||||||| | ||||| || ||| || Sbjct 7650 AAACCGTCCGTTTCGACAGCCACGAATTAGTGCTTATCCATTTGCCGCGACAGGTGTTGT 7591 Query 8549 TTTACGATGCCTCATCAAGCCAGAACGGGCCGCAATGGTGCGTACTGAAAACAGGTTTAT 8608 ||| || ||| | | | ||||||||||||||||||| || | |||||||| || || | Sbjct 7590 GTTATGACGCCGCGGCCAACCAGAACGGGCCGCAATGGAGCCTGCTGAAAACGGGCTTTT 7531 Query 8609 ACGACGATGTTTATCGCGCCATCGACTTCATGTACGAAGGCAACCAGATAACGTGCGGCG 8668 | ||| | ||||||| |||||| || |||| | | | | || | || || |||| Sbjct 7530 ATCACGCTCCCTATCGCGGCATCGATTTTATGTTTGCCGACCATCACCTCACCTGTGGCG 7471 Query 8669 ATAAATCAGAAGCAGTGACAGGGCAGTTGCAATTCGACAT-TAGTAGTCAGTACGACAAG 8727 ||||| || || | || || | | || | ||| | | || || || || Sbjct 7470 ATAAACACGATGCCCTCCTCGGCCAACTTGATTTTG-CATCTTCTGCGCAATATGAAAAA 7412 Query 8728 CAGCAAGAACATATGCTGTTTACTCCCATCTTCAAGGCTGATAACGCCAGATGCTTCGAT 8787 | ||| || ||| | || | ||| || | |||||||| ||||| ||| | || ||| Sbjct 7411 CCGCAGGAGCATGTTCTCTATACCCCGCTTTTCAAGGCAGATAATGCCCGCGTATTTGAT 7352 Query 8788 CTGGAAGTTGAATCCTCGACAGGCGTTGCGCAGTACGCTGACCGCCTGTTCCTGTCTGCA 8847 | ||| | || | || || ||||| ||||| ||| |||||||| ||||| || || Sbjct 7351 TTTGAACTGGAGGCATCAACCGGCGTGGCGCACATCGCCGACCGCCTCTTCCTCTCCGCC 7292 Query 8848 ACCACAGACGGAATCAACTATGGTCGAGAGCAGATGATTGAACAAAATGAGCCGTTTGTG 8907 ||| | ||||| || | | ||| || || ||||||||| | ||||||| |||||||| | Sbjct 7291 ACCGCCGACGGCATGCATTTTGGCCGCGAACAGATGATTAACCAAAATGCGCCGTTTGCG 7232 Query 8908 TACGACAAGCGTGTTATCTGGAAACGTGTTGGGCGCATTCGTCGATTAATCGGATTCAAA 8967 || ||| |||| || ||||| || ||||| ||| | | |||| || ||| Sbjct 7231 TATGACCAGCGAATTCTCTGGCGGCGGGTTGGCTACATCAGAAAAAATGTCGGCTTTAAA 7172 Query 8968 CTGCGTGTAATCACCAAATCACCAGTAACACTATCCGGGTGTCAAATTCGTCTGGAGTAA 9027 | || || |||||| ||| || || || || ||||| ||||| || | |||| || Sbjct 7171 GTACGGGTGATCACCTCATCGCCCGTGACGCTCTCCGGTTGTCAGATAAGGATGGAATA- 7113 Query 9028 AATATGGCA---GATCCGTCACTTAATAATCCTGTCATTATTCAGGCCACCCGTCTTGAT 9084 |||||| ||| || || |||||||| || || || |||| || |||||| Sbjct 7112 ---ATGGCAAACGATACGCCA---AATAATCCCGTGGAAATACACACCACGCGCCTTGAT 7059 Query 9085 GCC 9087 || Sbjct 7058 ACC 7056 Score = 324 bits (358), Expect = 4e-84 Identities = 639/943 (68%), Gaps = 2/943 (0%) Strand=Plus/Minus Query 12952 AAGTAGTGGCATTGCACAAGCCGAAGGTGCCTTAGCATCAACACCAGGAATTGTTCAGGA 13011 |||| | || || ||||| |||||||| || || ||||| ||||| ||||| || || Sbjct 3869 AAGTCGCGGGATAGCACAGGCCGAAGGCGCATTGGCATCGACACCGGGAATAACACAAGA 3810 Query 13012 TGCACATCAGGCAGCATTTAACGAAATATCCTCAAAGTTAAGTCGAAACCTTGATGAATT 13071 ||| || | ||| || ||||| ||||| || ||| || | || || || |||| ||| Sbjct 3809 TGCTCACCGGGCCGCCTTTAATGAAATTGCCGAAAAATTTACCCGCAATCTCGATGCATT 3750 Query 13072 TGGGGCTGCATCTGGAACAGCATCAGAAAAAAGTGCAGCGATAAAACAAAGGGTTCTTCA 13131 || |||| | || || ||||||||||| ||||| ||||| ||| | ||||| | | Sbjct 3749 GGGCGCTGAGGCGGGGACGGCATCAGAAAAGAGTGCCGCGATTAAAGGACGGGTTTTAAA 3690 Query 13132 AAATCTTGATCAGATGAAGGATGCCGAGCGCGCGGCATGGGATGATGTGCGGTCAACAAT 13191 ||||| ||| | ||||| | || || | || || |||||| |||||||| | ||| Sbjct 3689 CAATCTGGATGAAATGAAAAAGGCGGAATGGGCCGCCTGGGATAATGTGCGGGACATAAT 3630 Query 13192 GCCACATCAAAAAGCAAGAATGCCAAATGGCAATTCCGTTATTCAGGCAGAGCGATCTGC 13251 ||| || |||||| | | ||| | |||| || ||| | || ||| || Sbjct 3629 GCCGCAGCAAAAAATGCGGCTTAAAAACGCCAATGGGGTAATTGCTGGTGAAAAATCGGC 3570 Query 13252 TGGCATACCGCTTACTCCTGAAATGAAACAGTTTGTTCAGGCAAACAATCAAGGTGGAGT 13311 ||| | ||||| || | |||||||| || | | ||| || || ||| || || Sbjct 3569 GGGCGTTCCGCTGACCTCAGAAATGAAGCAACTCGACGCGGCGAATAAACAATCCGGCGT 3510 Query 13312 AACATTTGATGGAATGAAAGCATGGAGAGCTAAATTTGCTGATGCGGAGCAAAAATATAA 13371 || ||||| || |||||||| ||| | || || ||||| || || ||||||||||||| Sbjct 3509 GACCTTTGAGGGCATGAAAGCGTGGCGCGCCAAGTTTGCCGACGCAGAGCAAAAATATAT 3450 Query 13372 GCGTAGCGGAGAGGCAAATGCGGCAAGGAGGGCCGGGGAAATACGCCGAGCAATTACTGA 13431 | | || || || ||||| || | || || || || | || || || || || || Sbjct 3449 CAGGAATGGCGAAGCCAATGCCGCCCGCAGAGCGGGTGAGGTTCGGCGCGCCATCACGGA 3390 Query 13432 TGATATGCGCACAATGGCGGAAAATGGCGGCTTTCTTGATGACTGGAAAAAAGCCAATGA 13491 |||||||||| ||||| ||| | ||||| |||||||||||||||| ||||| | Sbjct 3389 TGATATGCGCGTTATGGCTGAACAGGGCGGTTTTCTTGATGACTGGACGCGGGCCAACGC 3330 Query 13492 TCTGTCTAAAGCGAGGTTATCTGCCCAGGAGAGTGCAGAGTCTGTTTTTGGGCG-TGATT 13550 | || ||||| | || | |||| || ||| || || ||||| || || | | Sbjct 3329 GTTATCAAAAGCCCGATTGACCGCCCTTGACCATGCCGAATCGGTTTTCGGTCGCAGCCT 3270 Query 13551 TGGCAACAGATGCACTGATTACGAATGGAGTAAAATCTCTTCAATCATCATCAGCTAAAG 13610 || ||| |||| ||||| || || || || ||| | || ||| | | |||| || | Sbjct 3269 TGCCAA-TGATGTGCTGATCACCAAGGGGGTGAAAGCGCTGCAAACCGCCTCAGAAAAGG 3211 Query 13611 GGCTTAATGGTCCTTCTGGGTTCCATTCTATGATTCGCTCGCTACCAGAATCAGAGCGTG 13670 |||| || || ||| || ||| | || || | | || || ||| | || || | Sbjct 3210 GGCTGAACGGCGAGGGTGGTTTTCATACCATTATCTCCGCACTGCCTGAAACCGAACGCG 3151 Query 13671 TTCCTGCTATATCATCAATGTTACAGGATGCTATTTCACATGGTGTACGTGGTGGCAAAG 13730 |||| || ||| | || ||| | |||||||| | || ||||| || || || ||||||| Sbjct 3150 TTCCGGCCATAGCGTCCATGCTTCAGGATGCGCTATCGCATGGCGTTCGGGGCGGCAAAG 3091 Query 13731 CTGATGCAGCAGGCATTAACCATATCGCAGGGATACTTACTCCACAAAATGTAAAAGCCA 13790 | || | | || ||| ||||| | ||| | || |||||||| |||| Sbjct 3090 CCGAAGGGACCGGTATTGCGCATATTACCTCGATTTTGACCGAGCAAAATGTCGGTGCCA 3031 Query 13791 TTAGCAGATATTCCTCAGAGCTTGGAAGAATTGCTGATGCATATGGCACTCTTGCAAGAG 13850 | || ||||||| || || || | || || ||||| ||||| | ||||| |||| Sbjct 3030 TCAGTCAATATTCCAAGGAACTGGGCCGCATCGCCGATGCTTATGGGAAACTTGCCAGAG 2971 Query 13851 CAGCGGTGAAACCTCAGCAGTATATTGAAAGAACAGGGAGAAC 13893 | || || ||||| ||||| ||||| || | ||||| ||||| Sbjct 2970 CCGCAGTAAAACCCCAGCAATATATCGAGCGCACAGGTAGAAC 2928 Score = 93.3 bits (102), Expect = 1e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 10401 AAGGTTTATCCTCTCTCGAAGGTCAGGGGCAGGCGCTTAACGATTATTACAACTCTCAGC 10460 |||| ||||| | ||||| || || ||||||| |||||||||||||| | | Sbjct 5932 AAGGATTATCGACGCTCGAGGGACAAAACAAGGCGCTCGGTGATTATTACAACTCAGACC 5873 Query 10461 AGTATAAAGACCTTGCCGGGCAGGCACGTTACCAGAATCTGGCAGCGGCAGAAGCAACAG 10520 |||| | || |||| ||||| ||||| ||| ||||| | ||||| || || | Sbjct 5872 AGTACCGGCAACTGGCCGACCAGGCGCGTTATCAGTCGCTGGCGTCCGCAGAGGCGACCG 5813 Query 10521 GTGGCCTGGGTTCTACAGCGACAAGTAACCAGCTTGCAGCAATCGCTCCAACACTTGGTC 10580 | || ||||| || || || || |||| || || || || ||||| || | || || | Sbjct 5812 GCGGACTGGGGTCAACGGCTACCGGTAATCAACTGGCGGCCATCGCGCCTGCGCTCGGGC 5753 Query 10581 AGCAATGGCTGTCAGGTCAGATGAATAACTA 10611 || | ||||| || ||||| ||| | ||||| Sbjct 5752 AGAACTGGCTCTCCGGTCAAATGCAGAACTA 5722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132157408920600