Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq439 251 2e-62 seq785 196 1e-45 >seq439 Length=76666 Score = 251 bits (278), Expect = 2e-62 Identities = 418/601 (70%), Gaps = 2/601 (0%) Strand=Plus/Minus Query 26007 CCACTGCTCCCCGAACGTGAAGCCAATCTCCTTTAGCGCTTCGTCCATCTTTTCGATAAA 26066 ||||||||| || || || ||||||| || || ||| ||||| |||| ||||| Sbjct 70427 CCACTGCTCGCCAAAGGTAAAGCCAAGTTCAGCTAACGCCATATCCATTCTTTCTATAAA 70368 Query 26067 TTCCGGTACCATTTCGTTGAAGAGGGACATGTATTTGTCGTCTCGCTCAACAACCACGTG 26126 || ||||| || | || || |||||||| |||||||| |||| || |||| Sbjct 70367 CTCTGGTACGGACTCTTCAAATTTTGAAATGTATTTATCGTCTCGTTCAATAATGACGTT 70308 Query 26127 GTGGATACCTTCTCGTTTCATGCGCGGGTCATAATTCGCGAAATACCATGCATCTCTCCC 26186 ||| | ||||| |||||||| || |||||||| || || |||| |||||| ||| |||| Sbjct 70307 GTGAAGTCCTTCACGTTTCATTCGAGGGTCATAGTTAGCAAAATGCCATGCGTCTTTCCC 70248 Query 26187 GGTTACCCACATGCTGAATTGCACCTGGGCCATATAGGCGGATTTGATAGCCTCGAAGCC 26246 || ||||||||||| || || ||||| |||||||| | |||||||| | || ||||| Sbjct 70247 CGTAACCCACATGCTAAACTGGACCTGAGCCATATATTCCGATTTGATGCCGTCAAAGCC 70188 Query 26247 GCCAAGCCTGAATTTCATAAAGTCGCGAGAGGTGAAAGGGCACTTCAACTCAAGACCGCG 26306 || || || || ||||||||||| || || || || ||||| || ||||| || | Sbjct 70187 ATTCAGTCTAAAATTAATAAAGTCGCGTGATGTAAATGGACACTTTAATTCAAGTCCCAG 70128 Query 26307 GCCATCACTGCACAGGCCGTCAGGAGAACAGGCGGTACGCATGCCCTCGTCACGGAAAAG 26366 |||||||| || ||| || || || || || |||||| | ||||| ||| | Sbjct 70127 CCCATCACTACAGTCGCCATCGGGGGAGCACGCTACACGCATATCGTCGTCCTTGAATAT 70068 Query 26367 GATCGGCGAC-CCGGTGACCTTCACGTCAGTGGTGAACTCAAACAGGGTGCGAGCATCGT 26425 ||| || ||| || | || | | | || |||||||||||||| | || | | Sbjct 70067 GAT-GGGGACGTCGATAACGGTTAACCCTGTAGTGAACTCAAACAGTCGTCTTGCTACCT 70009 Query 26426 CCTCATACTGTTTCCCCCAGGCCAGCGCCTTGGCGTTAACTTCCGGTGCCACGCCGGTGC 26485 | || | | ||| ||||| | |||| | | || || ||||| || | ||||| | Sbjct 70008 CTTCGTTTTCTTTTCCCCATTCTAGCGGCCTTGCCTTCACTTCGGGAGATTGCCCGGTAC 69949 Query 26486 AAACTTCGGCAAGAAGGGTGAGAAAGTAGGACATCTTCATATCAGTCCACTTCTTGCCCG 26545 ||| ||||||| || || ||||| ||| |||| |||| ||||| || ||||| | Sbjct 69948 AAATCTCGGCAATCAGCTTGTTGAAGTAAGACCGCTTCGTATCCGTCCATTTGTTGCCTG 69889 Query 26546 ACTTTGGCCTGGAAATGACGTTGTGAACTTCGGAAGCAGTGATGACACCGAGGCGTAGAC 26605 | ||| |||||||| ||| | | | || || || || ||| | || ||||| | || Sbjct 69888 AACGTGGGCTGGAAATCACGCAGGAAGCCTCTGAGGCGGTTATGGCGCCAAGGCGCAAAC 69829 Query 26606 G 26606 | Sbjct 69828 G 69828 Score = 197 bits (218), Expect = 4e-46 Identities = 372/543 (69%), Gaps = 3/543 (1%) Strand=Plus/Minus Query 16519 CCGCTGCTGGTGGATGTGCCCGTGGTATTTCCTCGCGGCGGTGGCTGCACCTTAACTTTT 16578 ||| | ||||| ||||| || || | || ||||| ||||||||| || | || ||| Sbjct 7928 CCGTTACTGGTAGATGTTCCTGTCATTTTCCCTCGTGGCGGTGGCGTTACGCTGACGTTT 7869 Query 16579 CCGGTGAAAGCAGGCGACGAATGCCTGGTAATTTTTTCCGATCGCTGCATCGATTTCTGG 16638 || || ||||| || ||||| ||||| | ||| | || |||||||||||||||||| Sbjct 7868 CCTGTTGCCGCAGGTGATGAATGTCTGGTGGTGTTTGCTGACCGCTGCATCGATTTCTGG 7809 Query 16639 TGGCAGAACGGCGGGGTACAGGAGCCTGTCGACGATCGGGTGCATGATTTATCGGATGCG 16698 |||||||||||||| || ||||| | | ||| || |||||||| ||||||||| Sbjct 7808 TGGCAGAACGGCGGCGTGCAGGAAACGATTGACTTACGTCAACATGATTTGTCGGATGCG 7749 Query 16699 TTCTGTATCGTCGGGCCGCAGTCGCAGGCGCAAAAAATAAGCGGAATAAGTACGGGGGCC 16758 || | || || || ||||||||||| ||||||| || || || || | ||| Sbjct 7748 TTTGCGTTTGTTGGCCCACAGTCGCAGGC-AAAAAAATCAGTGGTATCAGCGTGCATGCC 7690 Query 16759 GCGCAATTGCGTACCGATGATGGGGCTGCGTTTGTGGAAGTGGCTGCAGGCCATAACATC 16818 || || |||| | |||||||| ||||| ||||| | ||||| || || || ||| Sbjct 7689 GCCCAGCTGCGCAGTGATGATGGTGCTGCCTTTGTCGGGGTGGCGGCGGGACACGCCATT 7630 Query 16819 ACGGTTAAAACTACTGGTACGCTGACGGCTACTGCAGAAGGAGG-AACCACGATCACGTC 16877 || |||| || | ||||| | ||| || || | || || ||| |||| | Sbjct 7629 ACCGTTACCACACCGGGTACCTTAGAGGCCACGGCGCAGGGCGGTGTGGACG-TCACTGC 7571 Query 16878 GCCCAGAATCACGCTAAACGGTAACGTGACAATAAATGGAAATCTTTCTCAGGGTATGGG 16937 ||| | || ||| || || || || || || ||||| ||||| || ||||| ||||| Sbjct 7570 GCCGACCATTGTGCTCAATGGCAATGTCACCATCAATGGCAATCTGTCGCAGGGCATGGG 7511 Query 16938 TGAGGGCGGCGGTAGCGCAACGATGCTCGGTCCTGTCACGGTGACTAATGATGTGAAGGC 16997 || |||| || ||||| | || ||| || |||| |||| || || | | || Sbjct 7510 GGATAGCGGGGGAAGCGCCAGCATCAACGGCCCGGTCAGTGTGAAAAACGACATTACGGT 7451 Query 16998 GGGCGGTAAGAGCCTGATGACGCACACTCATGGCGGCGTGCAGACGGGTGGCGGGAATAC 17057 || |||| ||||||| | || ||| |||||| ||| | |||||| | || || Sbjct 7450 GGCGGGTATCAGCCTGACAAACCATGTGCATACCGGCGTTCAGTCCGGTGGCAGTAAGAC 7391 Query 17058 TGG 17060 || Sbjct 7390 GGG 7388 Score = 143 bits (158), Expect = 7e-30 Identities = 388/589 (66%), Gaps = 20/589 (3%) Strand=Plus/Minus Query 17314 ATGCGATACCGACGCGAAGATACCGAAGGTGATTGCACTTTTGGTAGTGGCGATGATTCC 17373 ||| ||||||||||||||||| | | || | || |||||| ||||| || || Sbjct 7378 ATGAGATACCGACGCGAAGATGAAAACGCGGACTACAGTTTTGGGCAAGGCGACCATACC 7319 Query 17374 TGGCTGATTAACTCGCCAGAAGCTGTCGCGCAGGCGGTAAAAACACGATTCGCATTGTGG 17433 | ||| | ||| || || ||| || |||||||| ||||| || | | ||| ||| Sbjct 7318 TTTCTGGTAAACAGCCCTGAGTGTGTTGCCCAGGCGGTGAAAACGCGTCTTGAATTATGG 7259 Query 17434 TACGGGCAGTGGTTCCTCGATAAGACAGAGGGAACACCGTGGATTCAGTCTGTGCTCGGT 17493 |||||| ||||| || |||| ||||| ||||| ||| |||| | ||||| ||| Sbjct 7258 CGCGGGCAATGGTTTCTGGATAGTGAGGAGGGGACACCCTGGCGTCAGGCGGTGCTGGGT 7199 Query 17494 AAGCAAAAGCCGGAAACCTACAATCTGGCGATCCGCAAGCGCATCCTCGAAACGCGGGGC 17553 ||||| || | || | ||| |||||| ||| |||| || || | || | | | Sbjct 7198 AAGCATAACACTGAGGCGTACGGTCTGGCTATCAAGCAGCGTATTCTTAACACACCCGAC 7139 Query 17554 GTGAAATCCATCCTCTCTTTCAA------TACCACAG-TGAA-CACGACGACGCGCCGCG 17605 || |||| | |||||| |||| | |||| | ||| | ||| | Sbjct 7138 GTCCGTGGCATCAACGATTTCAACGCGATTACCTCCCCTGAAACCCGAAAAATTACCGTG 7079 Query 17606 TCCAGTTCTTCGCTGAAATCGACACTATCTACGGAACAACGACAGTAACCAGCGAGGCAT 17665 || || || || | ||| || |||||| || |||| | ||||||| | Sbjct 7078 ACC-GT-----GCGGATACAGACGCT--CTACGGCGAGACCGCAGTTATAAGCGAGGTCT 7027 Query 17666 AAATGGCCCTCAATTTGGACACACTCGGCTTATCGGCAACGGTAACCGCTGAGGGGATCA 17725 || ||||| | || || || ||| | ||||| || || |||| || |||| Sbjct 7026 AATGCTCCCTC----TCGATACCCTTGGCCTGTCGGCGACCGTCACCGACAGCGGCATCA 6971 Query 17726 GTGCGCCTGATTACCAGACGATACTCGATACCCTGACGAGCTATTTCCAGCAGATTTATG 17785 ||| |||||||| ||||||||||| | || || ||||||| | |||||||| | Sbjct 6970 CTGCACCTGATTATCAGACGATACTGCAACAGCTCACCGGCTATTTTCGCCAGATTTACG 6911 Query 17786 GTAGTGACGCTTATCTGGAGCCGGACAGCAAAGACGGCCAGATGGTGGCGCTGGTGGCGC 17845 | | || |||||| |||||||||||| |||||||||||| | ||| | |||| Sbjct 6910 GCGGGGAGTGCTATCTGTCGCCGGACAGCAAGGACGGCCAGATGATAGCGATTTACGCGC 6851 Query 17846 TTGCTATTCACGATGCCAATAACACAGCCATTTCCGTCTATAACTGCTT 17894 | ||| | ||||||||||| ||| | | || ||| ||| ||| |||| Sbjct 6850 TGGCTCTCCACGATGCCAACAACGCGGTTATCGCCGCCTACAACAGCTT 6802 >seq785 Length=2355 Score = 196 bits (216), Expect = 1e-45 Identities = 194/251 (77%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 11802 GGCGGTAGTGTGGACGCGGCGCGGACTTCGCTGGAAAGCCTCTCCCGGTTTGTGCGTAAT 11861 ||| | |||| || || |||| | ||||||| ||||| | || || |||| ||| Sbjct 4 GGCAGCAGTGCCGAAGCAGCGCAGGGCGCGCTGGAGAGCCTGGCGCGATTGATGCGCAAT 63 Query 11862 AATCCCGGCGCGGAAGGCTTTCTGAACCGCCTGGGCGTACAGACCCGGGACGCCAGCGGG 11921 | ||||| || |||||||| |||||||||||||| || || || ||||| ||| |||| Sbjct 64 ACCCCCGGTGCAGAAGGCTTCCTGAACCGCCTGGGGGTGCAAACACGGGATGCCCGCGGA 123 Query 11922 AATATGCGCGATATGGCCGCCATTTTTACGGGCGTCGGCCAGAAGCTCAGCAGCATGCCG 11981 ||||| || ||| | || || ||||| || ||||| || || ||| || ||||| Sbjct 124 CGGATGCGTGACATGTCGGCGATCTTTACCGGTGTCGGGCAAAAACTCGGCCAGATGCCC 183 Query 11982 TATTACCGGGCTAACCAGTATGCGCAGATGCTGGGCATTGATGAAAATACCCTTATGGCG 12041 ||||||||||| ||||||||||| || ||||||||||| |||||||||||| | |||||| Sbjct 184 TATTACCGGGCAAACCAGTATGCACAAATGCTGGGCATCGATGAAAATACCTTGATGGCG 243 Query 12042 ATGCGCCGGGG 12052 |||||| |||| Sbjct 244 ATGCGCAGGGG 254 Score = 179 bits (198), Expect = 1e-40 Identities = 454/685 (66%), Gaps = 38/685 (6%) Strand=Plus/Plus Query 13547 ATGGATATTCTCTCTACTCTCTTTCATCAGCAGTCCAGGAGAATTGGGGTGCTTATCCCC 13606 |||||||| || ||||| || || |||| || | | |||||| || | | || Sbjct 1689 ATGGATATCCTTTCTACACTGTTCTCGCAGCCCTCGCGCAAAATTGGTCTGTTGGTGCCG 1748 Query 13607 AGTGTGGTTGTTTCAGAGAAGCACACCGACACGCTAGAGATAACAGAGCACCCTGTCGAG 13666 |||||| |||| ||||| ||| ||| ||| || || || ||||| || || || Sbjct 1749 GATGTGGTGATTTCGGAGAAACACCAGGACCAGCTTGACATCACCGAGCATCCGGTAGAA 1808 Query 13667 GTCGGTGCCGCCATCGCTGACCATGCCTACAAAAAACCGTCTGAAGTGGTGATGGAGGTC 13726 |||| || | ||||||||||| ||||| | || |||| || ||||||||| Sbjct 1809 ATCGGCGCTGAAATCGCTGACCACGCCTATCAGCGGCCCGCTGAGCTGACGATGGAGGTG 1868 Query 13727 GGTTTCGCTGGTGGCGGATCGTTGCTGGATT-TTGCCAGTAACCTGACGGCCACCA---- 13781 || || || || ||||| || ||||||||| ||| | ||||| | | Sbjct 1869 GGGTTTGCCGGCGGCGGCTCACTGCTGGATTGTTGGGAT-------ACGGCAAAAATCGG 1921 Query 13782 GCTTA--CTGGGCCTGAGTCCTCAGCAGACGTATCAGGAGATACTCGACTTGCAGGAAAG 13839 ||| | |||||||||||||| | | | || |||||| || | || || | |||| || Sbjct 1922 GCTGAGTCTGGGCCTGAGTCCACGGGAAACCTATCAGAAGCTGCTTGAACTTCAGGCCAG 1981 Query 13840 CCGTATTCCCTTCGATGTGGTGACCGGCAAACGGCTGTACAGCAACATGCTGATCCGCGC 13899 ||| || ||||||||| | |||||||| |||| ||||||||| |||||||||||||| Sbjct 1982 CCGCCAACCGTTCGATGTGATAACCGGCAAGCGGCAGTACAGCAATATGCTGATCCGCGC 2041 Query 13900 ACTGGAGGTGACGACCGACAGGACGACCGAAAATGTCTTGTCCGCCGTCCTCACCCTGAG 13959 | |||||||||||||| | | | | ||||| || || | || || ||| | Sbjct 2042 GATTGAGGTGACGACCGATAAGGCCAGTGAAAACGT-------GC--TGCTGACGCTGCG 2092 Query 13960 GGAGGTTCTCATCTCGCAGACGCAGCAGGTAACCGTCGCGGATAAAACCGACATGAAGGA 14019 ||| | || | | |||| | | || || || | || ||||| |||| Sbjct 2093 CGAGCTGAATATGACCCGGACGGAAACCGCGACGGTGACGCGCCAGGCCAACATGCAGGA 2152 Query 14020 CGGGGCCAGCA-CGTCGCCAGTCCTCAATACCGGAACCAAAACAACTAAA-CCGCCCAAC 14077 || |||| || || || | || |||||||| |||||| || ||| ||| | Sbjct 2153 GGGAGCCACCACCGCCGGC-GTGGCGAATACCGGGGTCAAAACCACGAAACCCGTTGAGA 2211 Query 14078 ACTTC--TTTATTGCAGAGTGGTGCGGCTTTTCTGGGGCTGGGTTAATGACTATTCAGGA 14135 || || ||| | ||| ||||||||| | || |||| || | || Sbjct 2212 ACGTCAGTTTGCTACAGCGTGGTGCGGAGAT----------AGTGAATGGTGATGAATGA 2261 Query 14136 AATTCCGCTGACCGCGGATAACCAGCAGTTCAGCATCATCCTGGCGGGTATCACGTGGCG 14195 |||||| ||||| ||| |||||||||||||||||||| || | || | | |||| Sbjct 2262 AATTCCCCTGACGGCGACTAACCAGCAGTTCAGCATCACGCTTTCCGGCACCGTCTGGCA 2321 Query 14196 GATTCGCATCATCTGGCGTGACCTG 14220 ||| ||||| |||||||| ||| || Sbjct 2322 GATGCGCATTATCTGGCGGGACGTG 2346 Score = 95.1 bits (104), Expect = 3e-15 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 12471 TCGCCGATTGGCCTCATTACCGCGCTGGCGGCGGGGATCGCCCTCCTGTGGGAAGACTAT 12530 |||||||| ||| ||||||||| |||||| || | ||| | |||||||| ||||| Sbjct 673 TCGCCGATGGGCATCATTACCGGGCTGGCAGCCGCGATATTATTGCTGTGGGACGACTAC 732 Query 12531 CAGACCTGGAAGGAAGGCGGCCAGAGCCTGATTGACTGGGAGAAATGGAAACCGGAGGTC 12590 ||||||||||||||||| || || | | ||||||||| ||| ||| |||||| || Sbjct 733 CAGACCTGGAAGGAAGGGGGAAAGTCCTTTATTGACTGGTCGAAGTGGGGACCGGAAATC 792 Query 12591 GA 12592 || Sbjct 793 GA 794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130243846437924