Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_028701.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq804 156 9e-34 seq679 127 4e-25 seq735 95.1 3e-15 >seq804 Length=1783 Score = 156 bits (172), Expect = 9e-34 Identities = 279/407 (69%), Gaps = 8/407 (2%) Strand=Plus/Minus Query 23062 AGAGGGTTTAACGTTACTGCATGTTGCAGGTAATCGGGGGCAAGGTGAGCATAAACCATC 23121 || || ||||| | || |||| ||| || || ||||| || | |||||||| |||| Sbjct 671 AGTGGATTTAAAGCCACGGCATTTTGAAGATAGTCGGGTGCTAAATGAGCATAGGCCATT 612 Query 23122 GTCTGTTGTATGCTGGCGTGCCCCAGAATTTGCTGTAACGCAATAATATTTCCCCCGTTC 23181 || || || || |||| || |||| ||||| || | ||||||||||| || || ||| Sbjct 611 GTTTGCTGGATATTGGCATGTCCCAAAATTTCTTGCAGTGCAATAATATTACCACCATTC 552 Query 23182 ATCATGAACCAGCTTGCGAACGTATGCCGAAGCACATGCGTGGCCTGCCCGCGTGGTAAA 23241 ||||| || || || || ||||| || |||||||| || ||||| ||| |||||| | Sbjct 551 ATCATAAAATGACTAGCAAATGTATGACGTAGCACATGTGTTGCCTGGCCGTGTGGTAGA 492 Query 23242 TCGGGCTTAACCTGTCTGAGCCGTTCGCAGAAGTTTTCATAATCAACTTTGAACAGTGGC 23301 ||||| || || | ||| | |||||| || ||||| || |||||||||| | Sbjct 491 TCGGGTTTCACTGAACGCAGCTTTATGCAGAATTTCTCATAGTCTACTTTGAACAAATGA 432 Query 23302 CCGGTGTCGCTGGTCTTGATCTCTTTCTCCAGTTCTTCCGATATCGGAATCGTGCGTTTT 23361 | | | | || | ||| ||||||| | ||||| || | |||||||| Sbjct 431 CTACTTGCATGCATTTTAACCTCACCTTCCAGTTGAGCAGATATTGGCACGGTGCGTTTC 372 Query 23362 TTCCCGTTTTTGGTCTTAAGGAACGTCACGCGCCCGT----GATTAACCTGCTCACCTCG 23417 || || || || || | ||| || || || ||||| | |||| ||| | | Sbjct 371 TTGCCATTCTTAGTTTCAAGAAATGTAACTCGCCCTTTCACGATT----TGCGTAGGTGT 316 Query 23418 CAGCGTGCTGCCTTCGCCCCAGCGTGCACCGGTGCTTAAGCATAGCA 23464 || ||||| |||| ||||| ||| ||||||| |||| |||||||| Sbjct 315 CAAGGTGCTCACTTCCCCCCACCGTCCACCGGTACTTAGGCATAGCA 269 >seq679 Length=8099 Score = 127 bits (140), Expect = 4e-25 Identities = 386/587 (66%), Gaps = 32/587 (5%) Strand=Plus/Minus Query 21313 ATTGAGATAGACCACGCCGATCAGACGAGTGAATCAGATATCAGCTTCTTAACGCGCATG 21372 ||||| |||||||||||||| ||||| ||| ||||| || | || |||||| Sbjct 1749 ATTGAAATAGACCACGCCGACCAGACACAGGAAAGCGATATGTCGTTTCTGACCCGCATG 1690 Query 21373 GCCGAAATGCTGGGCGCGGTGGCAACCATTAAAAACGGTATGCTTCTGTTTATCACGCCG 21432 || || |||||||||||| | || || || |||||||| ||| |||||||| |||| Sbjct 1689 GCGGACATGCTGGGCGCGATAGCCACGATAAAAAACGGCTGGCTACTGTTTATTCTGCCG 1630 Query 21433 GGCAAGGGAGTGACGCAGAGCGGCAAGCCGCTGCCGGTGATCGAGATAGTCCGGTCA--A 21490 ||| || || | | ||| ||| ||||||| | | || | | || || | Sbjct 1629 GGCGGCGGCGTCAGTGCGTCCGGTAAGGCGCTGCCT-TCCGCCAGC-ATTACGCGCATGA 1572 Query 21491 GCGGTGATAAACATCGGTTTAACGTAGCTGACCGTGACGCGTACACGGGCGTAACTGCAT 21550 | || || ||| || ||| | | || || || || || || || ||||| || | Sbjct 1571 GTGGCGACCGACACCGTTTTCGCATCGCGGATCGGGATGCCTATACCGGCGTGCGGGCCT 1512 Query 21551 ATTGGCTTGATCTCAACTTTGGCAAGAAACCATCCACT-ACCGTGAAGAAAACCACCCGC 21609 | ||||| ||||| || |||||||| ||| | | | | ||| || | ||| Sbjct 1511 ACTGGCTGGATCTGAATTTTGGCAA-AAAGAAAAAAGTCAGCGTCAA----AGCAC---- 1461 Query 21610 AGGCGACGAACCAGCCAGGCCAAAAAGAAAGAACCCGCATCA--AGCAAAAAAGAAGGGG 21667 | || | ||| |||| ||| | ||||| || |||| ||||||| Sbjct 1460 -GTCGGCCAAC-AGCC--GCCGA-----------CCGCAACAGCAGCAGCCGCGAAGGGG 1416 Query 21668 ATTATCTGGCAGGGGCCGAAGGTAACGTTTTTGTTATCCGTAAAACCTTCAAGACGGAAA 21727 ||||| || ||| || || || ||||||| ||| | || || |||| | ||| ||| Sbjct 1415 ATTATAGGGAAGGTGCGGACGGCAACGTTTATGTACTGCGCAAGACCTACCAGAATGAAG 1356 Query 21728 AGGCGGCGAAGCGGGCCGCTGCGGCTAAGTGGCGGGAGTTGCAGCGTGGAGCAGCGACGT 21787 |||| || || || ||||| || || ||||||| | | | ||||| || || ||| ||| Sbjct 1355 AGGCCGCAAAACGCGCCGCCGCCGCAAAGTGGCAGCAACTTCAGCGGGGCGCCGCGGCGT 1296 Query 21788 TCAGCATCACCCTGGCGCGTGGCCGCGCAGATTTGTACCCGGAACAGCCCGCCAGCGTCT 21847 || | | || ||||| || ||||| || || | ||||||| | | ||| | | || Sbjct 1295 TCTCCCTGACTCTGGCCCGAGGCCGGGCGGAGCTTTACCCGG-AGATGCCGTGACCATCA 1237 Query 21848 ACGGCTTTAAGTCCACGATCGACAGTGGAAACTGGACGATAACGCGG 21894 ||||||| ||| || || || || |||||| ||| ||||| Sbjct 1236 ACGGCTTCAAGGCCGATATTGATCGTCAGGACTGGATTATAGCGCGG 1190 Score = 105 bits (116), Expect = 1e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 20475 TTGCGGGCTGGTCTGGTCTGAAATCGCTTTCAGGGTGGTATACAGGGTGCCGGTTTTGCC 20534 || |||||||| |||||| | ||| || || || || | ||||||| |||||| ||||| Sbjct 2631 TTTCGGGCTGGCCTGGTCGGCAATGGCCTTGAGCGTTTTGTACAGGGAGCCGGTCTTGCC 2572 Query 20535 TGCCTTGCCCAGCATGTTAGCCACGCGGGTGATCAATACAGGTGTATCCAGCGGGAACGC 20594 ||||||||||||| |||| || || || | |||||| ||||| | ||| ||||| | Sbjct 2571 GGCCTTGCCCAGCACGTTATTGACCCGCGTCAGCAATACGGGTGTGTTCAG-GGGAAAGG 2513 Query 20595 TGTT-TCGTCCGCATCATCAGC 20615 |||| |||| |||||||| || Sbjct 2512 TGTTCGCGTCGGCATCATCCGC 2491 >seq735 Length=2270 Score = 95.1 bits (104), Expect = 3e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 13037 ATCCCTGCCGGTTACGCCCTGATGCAGGGGCAAACATTTGATAAATCTGCTTACCCGTTA 13096 || || || || || |||||||||||||| || || ||||||||| | || || | Sbjct 2269 ATTCCCGCAGGCTATGCCCTGATGCAGGGACAGACGTTTGATAAAAGCACATATCCCAAA 2210 Query 13097 CTGGCTATAGCATATCCGTCCGGCGTTATTCCGGATCTGCGAGGCTGGATAATCAAAGGC 13156 |||| || || || || || || | ||||| ||| |||| |||||||| ||||||||| Sbjct 2209 TTGGCAATGGCTTACCCATCAGGGATCATTCCTGATATGCGTGGCTGGATGATCAAAGGC 2150 Query 13157 AAGCCCGCGAGCGGGCGCGCTGTGCTCTCTCAGGAGCTGGATGGCAACAAATCGCACAGT 13216 ||||| | || || ||| | | || |||| |||||||| ||||| || ||| Sbjct 2149 AAGCCTGAAAGTGGACGCTCAACCTTGAGCCAAGAGCAGGATGGCATAAAATCACATAGT 2090 Query 13217 CA 13218 || Sbjct 2089 CA 2088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107105100096402