Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_028743.1 Length=48594 Score E Sequences producing significant alignments: (Bits) Value seq439 176 1e-39 >seq439 Length=76666 Score = 176 bits (194), Expect = 1e-39 Identities = 344/503 (68%), Gaps = 4/503 (1%) Strand=Plus/Minus Query 668 GGCGTTATTCTTTGCGGTCGTGAGTTTATGAACTCATTGGAAGAAAGCTCTCTTGAAGAA 727 ||||| || ||||||| ||||||||||||||||| ||||||| | | | ||| Sbjct 9215 GGCGTCATACTTTGCGTGCGTGAGTTTATGAACTCGCTGGAAGAGTCGAGTATGCAGGAA 9156 Query 728 GTTAAACAGGCGATCAAGTCTGAGCCTTTTTTAGCAAAtttttttGATGTCGGCGAGAAG 787 || |||| ||| || |||| | ||| | | || | |||||| |||| || || Sbjct 9155 GTGAAACTGGCAATACAGTCAGTGCCATGGCTGGCGGCTCACTTTGATATCGGTGAAAAA 9096 Query 788 TATGTTCGCACTAAAGATGGGCGGATTTCTTATGTGTTTTCCGGACTTCGGCATAACTTA 847 || ||||||| || |||| | |||||||| |||||||||||||| | Sbjct 9095 TACATTCGCACCCTCGACAGGCGAGTGAGCTATGTGTTCAGTGGACTTCGGCATAATCTT 9036 Query 848 GATAGCATCAAATCTAAAGCCCGTATTTTGAT-TGCGTGGATAGATGAAGCAGAAACAGT 906 || || |||||||| ||||| |||||| || | ||| ||| | ||||| || ||||| || Sbjct 9035 GACAGTATCAAATCGAAAGCACGTATTCTGCTGTGC-TGGGTGGATGAGGCTGAAACCGT 8977 Query 907 AAGCGAAACTGCTTGGCGGAAATTAATTCCAACCGTGCGTGAGAATAATTCCGAAATATG 966 ||||||| || |||| |||| | ||| ||||| || ||| | || ||| |||| Sbjct 8976 TAGCGAAATAGCCTGGCAGAAACTCGATCCCACCGTACGAGAGCCTGGCTCTGAAGTATG 8917 Query 967 GGTAACTTGGAACCCGGAAAATAGAGGG-AGCGCAACAGATACTCGCTTCAGGCAAAATC 1025 |||||| |||||||| | | | |||||| ||||| || |||| || || | | || Sbjct 8916 GGTAACATGGAACCCTG-AGACAGAGGGTAGCGCGACCGATAAGCGATTTCGCAAGGATA 8858 Query 1026 CACCTGAAAACAGCTGCATAATTGAAATGAGCTACCAAGATAATCCTTGGTTTCCTGATG 1085 ||| || | ||||||||| |||| |||||||| ||||||| || Sbjct 8857 GTGATGACGCCATTATCGCGGTTGAAATGAACTACATGGATAATCCATGGTTTCACAGTG 8798 Query 1086 TGCTCGAGCAAGAGCGGCTAAATGACAAACAGCGGCTTGATGATGCGACTTATCGCTGGA 1145 |||| ||||||| | ||| ||| | |||||| || || ||| ||||| Sbjct 8797 TGCTTGAGCAAGTGAGGCAGCGGGACCTCCGTATGCTTGACTCGGCAACCTATGCCTGGA 8738 Query 1146 TTTGGGAAGGTGCTTATTTGGAA 1168 |||||||||| || ||| ||||| Sbjct 8737 TTTGGGAAGGCGCGTATCTGGAA 8715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155376153693672