Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_028766.1 Length=33755 Score E Sequences producing significant alignments: (Bits) Value seq550 145 2e-30 >seq550 Length=29371 Score = 145 bits (160), Expect = 2e-30 Identities = 410/630 (65%), Gaps = 0/630 (0%) Strand=Plus/Minus Query 13031 GAAATGGATAAAGGAGCGTTAGTCTCTTGGTTAGCTCGCCCTATCCTCTACTTGATGAAA 13090 |||||||| | || ||| ||||| |||| || ||||| | || | ||||| | Sbjct 16781 GAAATGGAAGATGGCGCGGAGGTCTCCTGGTCCGCCCGCCCGCTGCTGACCCTGATGCAT 16722 Query 13091 ATCCGTGCTAGTGATGGGCACTCAGCATTTGACTCCGAGTATCAAAATGACCCTGTCTCG 13150 ||||| || |||| || ||| | | ||||| ||||||| || |||||||| ||| Sbjct 16721 ATCCGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGACCCGGTCAGC 16662 Query 13151 GGTGATGATGCGATTTTTGCCAACAGTATCCAGTATTGGACGGAACTGCCTGATGACCTG 13210 ||||| |||||| | |||||| || | | || | ||| | | || | | || | Sbjct 16661 GGTGAAGATGCGCTGTTTGCCCACTGCCTGCATTTCTGGGTCAACCGGCTTAACGAGTGG 16602 Query 13211 ATTTATTTCGGGGCGTTAGACCCCTCAATGGGGAAAGCTGGGGCAAGCCGTGACCCATCT 13270 | | | ||||| | |||||| | || || || ||||| ||||||||||| || Sbjct 16601 GTCTTCTATGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGTGACCCGTCA 16542 Query 13271 GCAATTTTGGTCGGTGGCTATCATCGTGAGAGTGGCAAGCTCTATGTTGTTGAGGCACAA 13330 || | |||||||||||| | |||| | | ||| ||| |||| || || || || Sbjct 16541 GCGCTGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGGTGGAAGCGCAG 16482 Query 13331 ATCAAAAAACGATTGCCGGATTTAATTATTGAGGACGTGATTAGACTGCATTCGCAATAT 13390 || || || ||||||| ||||| | | ||| ||||| | ||||| Sbjct 16481 ATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGCAAAAGGAATAT 16422 Query 13391 AACTGTCACCGCTGGTTTGTGGAGACGGTGCAATTTCAGGAGTTTTTGCAGACGGAACTG 13450 |||| | |||| | ||| ||||||| ||||||||||| ||| || || ||| Sbjct 16421 CACTGCCTGGTCTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGCGCACCGAGCTG 16362 Query 13451 GTCAAGCGTTCTGCCCAGCGTGGTAAGCCGGTGCCGGCAACGGCAACCAAGCCGAACAGT 13510 | ||||| | || |||| || | ||||||||||| ||| | | || | Sbjct 16361 ATTAAGCGCGCGGCTCAGCTGGGCCACCCGGTGCCGGCGCGGGCCATTATCCCCCATGCC 16302 Query 13511 GACAAGATGTTACGGATTGAGAGCTTGCAACCGCATATTGCCAACGGTTTGATTTTGTTG 13570 |||||| |||| || || |||| | |||| || ||||| | ||||| | || | || Sbjct 16301 GACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGCTTATCCGGCTG 16242 Query 13571 CACCGCTCGCAATCTACGCTTGAAAGCCAGCTTCGCCATTTTCCGAAAGCCGATCACGAT 13630 ||| | || | || || | ||||| ||||||||| | ||||| || || Sbjct 16241 CACGCCAGCCAGACCACCCTGATACAGCAGCTGCGCCATTTTTCCCGCGCCGACCATGAC 16182 Query 13631 GATGGTCCGGATGCGTTGGAAATGTTATGG 13660 || || ||||| ||| || | ||| | ||| Sbjct 16181 GACGGCCCGGACGCGCTGCATATGCTCTGG 16152 Score = 118 bits (130), Expect = 2e-22 Identities = 230/337 (68%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 2229 TGGATTGGTGACGGTCACTCACTGAAGCTCAAAGTAGCCCACCCGATACACGGTAAGCCG 2288 ||||| | |||||| | || ||||| | ||||| || || ||||||||||| ||| Sbjct 25911 TGGATAGCCGACGGTAAGTCGCTGAACATGAAAGTGGCGCATCCGATACACGGCCGGCCC 25852 Query 2289 TTTACCCCTGAGCTGACAATGATTGTCGATGGTGCTGGTA---GAAAAGTGGTGGGCTGG 2345 |||||||| |||||||| || | ||||||| || | | | | ||||||||||| Sbjct 25851 TTTACCCCGGAGCTGACGTTGGTGCTCGATGG-GC--GCACCCGCTATCTGGTGGGCTGG 25795 Query 2346 TCGCTGGCACTCAGTGAGAACGCCTTTGCGGTGGCTGATGCACTACGCCACGCCATTAGC 2405 ||| |||| || |||||| | ||||| || ||||| || | ||| | Sbjct 25794 AGCCTGTCACTGGCAGAAAACGCCATCGCGGTAGCGGATGCGTGGCGTTATGCCCTCCAG 25735 Query 2406 CTACACGGTGTGCCGGCAATCTACTACTCGGATAACGGTGGTGGTGAAAAGAATAAATTT 2465 | ||||| | | | |||||| |||||||| || ||||| | || || | Sbjct 25734 CACCACGGCAAGTCATTGTTTGCCTACTCCGATAACGGCGGCGGTGAGACCAACAAGATG 25675 Query 2466 TTGGATGCGGAAATCACGGGGATGTTGCCCCGCCTCGGTATCCGACACGAAACAGGGATT 2525 |||||||||| ||||| ||||| || ||||| || || || || || || || Sbjct 25674 CTGGATGCGGATATCACCGGGATTTTCCCCCGGCTGGGCATTGAGCATATTACCGGTATC 25615 Query 2526 GCGGGCAATCCGCAGGGGCGAGGCATTATTGAACGCT 2562 | |||||||| |||| ||| ||||||||||| |||| Sbjct 25614 CCCGGCAATCCCCAGGCGCGGGGCATTATTGAGCGCT 25578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107892284662854