Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq552 120 6e-23 seq804 111 3e-20 >seq552 Length=31981 Score = 120 bits (132), Expect = 6e-23 Identities = 285/426 (67%), Gaps = 15/426 (4%) Strand=Plus/Plus Query 21862 ATTGGCTATGTACGCGTGTCAACAAATGACCAGAACACGGAATTGCAGCGTAACGCGCTG 21921 || |||||| | | ||||||| ||||||||| ||||| || || |||| || | || Sbjct 30613 ATAGGCTATATGAGGGTGTCAAAAAATGACCAAAACACCGATTTACAGCAAAAATCCTTG 30672 Query 21922 GAGTGCGCAGGATGTGAGCTGATTTTTGAGGATAAAATCAGCGGCACTA-AGTCCGACCG 21980 |||||| ||||| | |||||||||||||||||||||||| | | || || | | Sbjct 30673 ATTTGCGCAAATTGTGAACAGATTTTTGAGGATAAAATCAGCGGAAAAACAGACC-AGAG 30731 Query 21981 ACCGGGACTGAAAAAACTGCTCAGGACATT---ATCGGAGGGGGATACACTGGTGGTCTG 22037 ||| ||| | ||| ||| || | ||||| | || || | || ||||| Sbjct 30732 ACCCGGATTTAAACGCGCGCTAGATGCACTGAAATCGG---GCGACACTTTAGTCGTCTG 30788 Query 22038 GAAGCTGGACAGGCTGGGGCGTAATATGCGGCATCTGGTCATTCTGGTTGAGGAACTGCG 22097 |||| |||| || ||||| || | ||| ||| || | | | | | ||||| Sbjct 30789 GAAGATGGATAGACTGGGTCGCAGTATTAAACATTTGATTACTTTAATATCCAAACTGGA 30848 Query 22098 CGAACGCGGCGTTAATTTTCGCAGCCTGACGGATGCTA-TTGATACCAGCACGCCGATGG 22156 || | || |||||| || |||||||| | | |||||||| || | | Sbjct 30849 AGATGAAGATATTTATTTTCATAGTTTGACGGATTCCAATTGATACCTCTACATCCTCTG 30908 Query 22157 GGCGTTTTTTCTTTCATGTGATGGGTGCCCTGGCTGAAATGGAACGAGAACTCATTGTCG 22216 | ||||||||||||||||||||| |||| |||| | || || |||||||| ||||| | Sbjct 30909 GCCGTTTTTTCTTTCATGTGATGAGTGCGTTGGCACAGATAGAGCGAGAACTGATTGTTG 30968 Query 22217 AGCGGACTCGGGCCGGGCTGGAAGCGGCCAGA------GCCAAAGGTCGTATTGGTGGCA 22270 |||| ||| ||| || ||| ||| | ||| | || ||||||||||||| Sbjct 30969 AGCGTACTAAGGCAGGTTTGGCAGCAACGAGAAGTAGGGGGCGGGGGCGTATTGGTGGCA 31028 Query 22271 GACGTC 22276 ||| || Sbjct 31029 GACCTC 31034 >seq804 Length=1783 Score = 111 bits (122), Expect = 3e-20 Identities = 139/187 (74%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 138 TTAAGAGTCACAGCATCTTGTAAGAAA-TCCGGTGCAAAGTGTGCGTAGGTCATAGTTTG 196 |||| || ||| |||| ||| |||| | || ||||| || || || |||| ||| ||||| Sbjct 664 TTAA-AGCCACGGCATTTTG-AAGATAGTCGGGTGCTAAATGAGCATAGGCCATTGTTTG 607 Query 197 CTGAATGTTAGAATGACCCAGGATGCGCTGCAATGTGATTATGTTACCTCCATTCATTAT 256 ||| || || | ||| |||| || |||| || || || ||||| |||||||| || Sbjct 606 CTGGATATTGGCATGTCCCAAAATTTCTTGCAGTGCAATAATATTACCACCATTCATCAT 547 Query 257 AAAATGTGTGGCAAATGTATGCCTCAAAACATGTACTGCTTGTCCGTCAGGTAAATCGGG 316 |||||| | ||||||||||| | | |||||| ||| || |||| |||| |||||| Sbjct 546 AAAATGACTAGCAAATGTATGACGTAGCACATGTGTTGCCTGGCCGTGTGGTAGATCGGG 487 Query 317 TTTTACT 323 ||| ||| Sbjct 486 TTTCACT 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93434968113138