Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1 113 3e-20 seq53 107 1e-18 seq308 98.7 7e-16 >seq1 Length=10097680 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||||||||| || |||||||||||||| ||| ||||| | || || || Sbjct 7547386 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAGCCT 7547445 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||||| | | || ||||| ||||| |||||||| || |||| || Sbjct 7547446 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCAGAT 7547505 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || || || || || ||||||||||| || | || | ||||| |||||| Sbjct 7547506 CAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGATTAC 7547565 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || ||||| || ||||||||||| | |||||||| || || Sbjct 7547566 AATATACAGAAAGAATCGACATTGCATTTGGTACTTCGTTTGCGAGGTGG 7547615 >seq53 Length=1361919 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 ||||||||| ||||| |||||| | ||||| |||| ||||| | || || ||| | | Sbjct 1241334 AATGCAAATCTTTGTAAAAACTTTGACTGGCAAATCCATTACTTTGGAGGTAGAACCATC 1241393 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | || || ||| |||||| || ||||||||| |||| || Sbjct 1241394 AGATACTATCGAAAAC--GTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGAT 1241451 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || || ||||| || |||||||| || |||| |||| | || |||||| Sbjct 1241452 CAGCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGACGGTCGCACTCTTTCGGATTAC 1241511 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || ||||| |||||||||||||| ||||| | || || || Sbjct 1241512 AATATACAGAAAGAATCAACTTTGCATTTGGTGCTGCGTCTCCGCGGTGG 1241561 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||| | ||||| ||| ||||| | || || || || Sbjct 1239761 ATGCAAATTTTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAGCCTTCC 1239820 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| ||| || || ||| || || || || |||||| |||| || ||| Sbjct 1239821 GACACTGTTGAAAACGTTAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 1239880 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || || || || || ||||||||||| || | |||| | || ||||||||| Sbjct 1239881 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACTCTCTCGGATTACAAC 1239940 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || || ||||| || |||||||| || ||||||||||| || ||| Sbjct 1239941 ATACAGAAAGAATCAACCTTGCATTTAGTGTTGCGTTTGCGCGGTGGC 1239988 Score = 104 bits (114), Expect = 2e-17 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||| | ||||| ||| ||||| | || || ||| || | Sbjct 1239989 ATGCAGATCTTTGTTAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTAGAAC-CATC 1240047 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || |||| || ||| |||||| || ||||||||| |||| | Sbjct 1240048 G--GAT--ACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAG 1240103 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || || |||||||| || |||||||| || |||| |||| | || |||| Sbjct 1240104 ATCAGCAGCGTTTGATTTTTGCTGGCAAACAATTAGAAGACGGCCGCACTCTTTCGGATT 1240163 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| | ||||| || || ||||||||||| |||||| | ||||| || Sbjct 1240164 ACAATGTACAAAAGGAATCTACATTGCATTTGGTGTTGCGTCTCCGTGGTGG 1240215 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || ||||| || || || ||||| || |||||| |||| Sbjct 1232437 GACAAAGAAGGTATTCCTCCCGATCAGCAGCGTTTGATCTTTGCTGGCAAACAACTGGAA 1232496 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||| |||||||| || |||||||| || ||||| |||||| | Sbjct 1232497 GATGGGCGCACATTGTCTGATTACAATATACAAAAAGAATCAACATTGCACTTGGTTCTA 1232556 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 1232557 CGTCTGCGTGGTGGC 1232571 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||| | ||||| ||| |||||| | || || || | Sbjct 1241562 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAAACTATTACTTTGGAGGTAGAGCCGTC 1241621 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 || | | || |||| ||| |||||| || || |||||| || | || || Sbjct 1241622 GGATACTATCGAAACGGTTAAAGCAAAAATCCAAGATAAGGAAGGTATTTCTCCCGATCA 1241681 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 || || || || ||||| || ||||||||||| |||| |||| |||||||||| || Sbjct 1241682 ACAGCGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGGCGCACTCTGTCCGATTAAAA 1241741 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || | ||||| || || ||| | || || || Sbjct 1241742 TATCCAAAAAGAATCAACACTCCATTTAGTCTTACGTCTTCGCGGAGG 1241789 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||| | ||||| ||| ||||| | || || ||| || Sbjct 1240216 AATGCAAATATTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAAC-CAT 1240274 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 || ||| || |||| || || |||||| || ||||||||| |||| Sbjct 1240275 CG--GAT--ACTATCGAAAACGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCTCCA 1240330 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || ||||| || ||||| |||| |||| || | | || || Sbjct 1240331 GACCAGCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGACGGTCGTACTCTCTCGGAC 1240390 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || ||||| |||||||||||||| |||||| | || || || Sbjct 1240391 TACAATATACAGAAAGAATCAACTTTGCATTTGGTGTTGCGTCTCCGCGGTGG 1240443 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || || || ||||| || || || ||||| || || |||| |||| ||||| ||| Sbjct 1232686 GATCAACAGCGTTTAATCTTCGCTGGTAAACAGTTAGAAGACGGGCGCACATTGTCTGAT 1232745 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || ||||| || || ||||||||||| || |||||||||||||| Sbjct 1232746 TACAATATACAAAAGGAATCTACGTTGCATTTGGTCTTACGTTTGCGTGGCGG 1232798 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| ||||| || || || ||||| | || |||| |||| ||||| ||| Sbjct 1239647 GATCAACAACGTTTAATATTCGCTGGTAAACAGCTAGAAGACGGGCGCACATTGTCTGAT 1239706 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || ||||| || || ||||||||||| |||||||||||||| || Sbjct 1239707 TACAATATACAAAAGGAATCTACGTTGCATTTGGTCTTGCGTTTGCGTGGTGG 1239759 >seq308 Length=190705 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| |||||||| ||||| ||||| || || ||||| |||| ||||| | Sbjct 86851 AATATGCAGATTTTTGTAAAAACCCTTACGGGCAAGACCATTACTCTTGAGGTCGAGCCC 86792 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || | || | ||| || ||| || || |||||||| || |||| | Sbjct 86791 TCTGATACTATTGAAAAT--GTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCG 86734 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || || || || |||||||||||||| || | |||| || || |||| Sbjct 86733 ACCAACAACGATTGATCTTCGCTGGAAAACAATTGGAAGATGGTCGCACATTATCGGATT 86674 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || || |||||||| ||| || ||| | || ||||||||||| || || Sbjct 86673 ATAATATTCAAAAAGAATCCACGTTACATCTTGTGTTGCGTTTGCGAGGTGG 86622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355855239492477