Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq308 161 2e-34 seq53 131 4e-25 >seq308 Length=190705 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| || | ||||| |||||||| || |||||||||| | || | ||||||||| Sbjct 86640 ACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGATAATGTGCGACCATCTTCC 86699 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | || || || |||||||| | ||||||||||| || |||| ||| || |||||||| Sbjct 86700 AATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 86759 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| |||||| ||||| || || |||||| || ||||| ||||| || ||||| Sbjct 86760 ATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGACCTCAAGAGTAATGGTCTTG 86819 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || |||||||| | |||||| || Sbjct 86820 CCCGTAAGGGTTTTTACAAAAATCTGCATATT 86851 >seq53 Length=1361919 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | || ||| | || ||||| ||||| ||||| ||||||||||| | || || Sbjct 1234457 ACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGT 1234398 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| || || || |||||||| | || || ||||| || |||| || Sbjct 1234397 ACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACC 1234338 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| ||| |||||||| ||||| || || || || || | Sbjct 1234337 TTCCTTATCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAA 1234278 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || || || | ||| || || || | ||||| Sbjct 1234277 AGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 127 bits (140), Expect = 5e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | ||| || | ||| | || || |||||||| || || ||||| | | || Sbjct 1232565 ACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGACAATGT 1232506 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| || ||||| || ||||| | || || || || ||||||| || Sbjct 1232505 GCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATACC 1232446 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| ||||||||| ||| || ||||| || || ||||| ||| || || | Sbjct 1232445 TTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCCACTTCTAA 1232386 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||| || || || || | |||||||| || | |||||||| Sbjct 1232385 AGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCATTTT 1232341 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || ||| | || || || || ||||||||||| || ||||| | || || Sbjct 1241783 CGAAGACGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGACAGAGTG 1241724 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||||| || ||||| || ||||| | || ||||| || |||| || ||| Sbjct 1241723 CGCCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAAATACCT 1241664 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || ||||| ||| ||| || ||||||| || || || || ||||| | | Sbjct 1241663 TCCTTATCTTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACCTCCAAA 1241604 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || || | ||| || ||||| | |||||| Sbjct 1241603 GTAATAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCATT 1241562 Score = 111 bits (122), Expect = 4e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || ||||| || || || || |||| || || | || ||||||||||| ||||| Sbjct 1240414 AGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACCGTCTTCCAGCTGTTTGCC 1240355 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || ||||| | || || ||||| ||||||| ||||| || || || || ||| || Sbjct 1240354 AGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTATCTTGAATTTTTGCCTT 1240295 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||||||||||| || || || ||| ||||| | ||| || || || || || | ||| Sbjct 1240294 AACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTAATGGTTTTGCCAGTCAAAGT 1240235 Query 211097 CTTTACAAACACCTGCATT 211115 || ||||| | |||||| Sbjct 1240234 TTTAACAAATATTTGCATT 1240216 Score = 107 bits (118), Expect = 4e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || ||||| || || || ||||||| ||| || | || ||||| | || ||||| Sbjct 1241532 AGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACCGTCTTCTAATTGTTTGCC 1241473 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || ||||| | || || || || ||||||| ||||| || || || || ||| ||| Sbjct 1241472 AGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTTGCTTT 1241413 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||||||||||| || || || ||| ||||| | ||| || | || || || | ||| Sbjct 1241412 AACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTAATGGATTTGCCAGTCAAAGT 1241353 Query 211097 CTTTACAAACACCTGCATT 211115 |||||||| | |||||| Sbjct 1241352 TTTTACAAAGATTTGCATT 1241334 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || ||||| | || ||||||| ||| || | || ||||| | || ||||| Sbjct 1240185 GTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCCGTCTTCTAATTGTTTGCCA 1240126 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | || || || || ||||||| ||||| || || || || ||| ||| Sbjct 1240125 GCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTTGCTTTA 1240066 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||||||||| || || || ||| || || | ||| || || ||||| || | ||| Sbjct 1240065 ACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTAATGGTTTTTCCAGTCAAAGTT 1240006 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | |||||| Sbjct 1240005 TTAACAAAGATCTGCAT 1239989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159127479950615