Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq53 104 2e-17 >seq53 Length=1361919 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||| || ||||| || || |||||||| ||||| ||||||| || || || || Sbjct 1241777 CGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGACAGAGTGCGCCCG 1241718 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | |||||||| ||||| || | |||||| || |||| | | | || || Sbjct 1241717 TCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAAATACCTTCCTTA 1241658 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || |||||| ||| | ||| | | ||||| || ||| || |||| || ||| Sbjct 1241657 TCTTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACCTCCAAAGTAATA 1241598 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || |||| |||||||||||||||||||| Sbjct 1241597 GTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 1241563 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 |||||| |||||||| || || ||| ||||| || |||||||||| || || || | Sbjct 1234451 GCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCC 1234392 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || | ||||| || || || || | |||||||||||| | ||| | | || || Sbjct 1234391 ATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTT 1234332 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| || ||||| | | | |||||| | ||| || |||| ||||| Sbjct 1234331 ATCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGAT 1234272 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || |||| ||||| || ||||||||||| Sbjct 1234271 GGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| | || || ||||||| ||| ||||| | ||| || || || Sbjct 1240203 CGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCCG 1240144 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | |||||||| ||||| || | ||||||||| || | || | | ||||| Sbjct 1240143 TCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTA 1240084 Query 39190 TCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 | | ||| ||| || || | || | | | ||||| | || || |||| || || Sbjct 1240083 T-CTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTAAT 1240025 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| |||| |||||||||||||| ||||| Sbjct 1240024 GGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| | || ||||| |||||||| || || | || || || || Sbjct 1240431 CGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACCG 1240372 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||||||||| ||||| || | |||||||||||| | || | | ||||| Sbjct 1240371 TCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTA 1240312 Query 39190 TCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 | | ||| ||| || | | || | | | ||||| | || || |||| || || Sbjct 1240311 T-CTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTAAT 1240253 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || |||| ||||||||||| |||||||| Sbjct 1240252 GGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||||||||| ||||| | | ||| || | || || || |||||||| ||||| Sbjct 1232534 TCTTTTTGTATATTGTAATCAGACAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAG 1232475 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || | ||||||||| |||| || | | |||||||| ||| || ||| | | Sbjct 1232474 ATCAAACGCTGCTGATCGGGAGGAATACCTTCTTTGTCTTGGATCTTTGCTTTTACATTT 1232415 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | ||||| | ||||| || | ||||| |||| || |||| || || || Sbjct 1232414 TCAATTGTATCAGATGGTTCCACTTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACG 1232355 Query 39274 AAGATTTGCATCTTTA 39289 ||||||||||| |||| Sbjct 1232354 AAGATTTGCATTTTTA 1232339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429536956871363