Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 154 1e-32 seq53 150 1e-31 seq308 136 3e-27 >seq1 Length=10097680 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| |||||||||||||| || || || ||||| || ||| | |||||||| | Sbjct 7547386 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAGCCT 7547445 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||||| | || |||||| |||||||| || | || |||||| Sbjct 7547446 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCAGAT 7547505 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || ||||| || || || ||||||||| ||||||| | || ||||| |||||| Sbjct 7547506 CAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGATTAC 7547565 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| ||||| || ||||| ||||| || | | |||||||| || Sbjct 7547566 AATATACAGAAAGAATCGACATTGCATTTGGTACTTCGTTTGCGAGGTGG 7547615 >seq53 Length=1361919 Score = 150 bits (166), Expect = 1e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 || |||||||| || ||||| || || | || || ||||| |||||| | ||||| || Sbjct 1232338 CTAAAAATGCAAATCTTCGTAAAGACATTGACTGGCAAAACAATCACTTTAGAAGTGGAA 1232397 Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | | || || |||||| ||||| ||| || |||||||||||| | || || Sbjct 1232398 CCATCTGATACAATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCC 1232457 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 ||||| |||||||| || ||||| ||||||||||||||||| | ||||| || ||| Sbjct 1232458 GATCAGCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGATGGGCGCACATTGTCTGAT 1232517 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||||||||| || ||||| || || ||| || | |||| || || Sbjct 1232518 TACAATATACAAAAAGAATCAACATTGCACTTGGTTCTACGTCTGCGTGGTGG 1232570 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||| | || || ||||| || ||| | || || || | | Sbjct 1241562 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAAACTATTACTTTGGAGGTAGAGCCGTC 1241621 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| ||| | |||| | ||| |||||| || || |||||| | | || ||||| Sbjct 1241622 GGATACTATCGAAACGGTTAAAGCAAAAATCCAAGATAAGGAAGGTATTTCTCCCGATCA 1241681 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| ||||||||| ||||||||| |||||| | |||||| || Sbjct 1241682 ACAGCGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGGCGCACTCTGTCCGATTAAAA 1241741 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || ||| | |||||||| ||| | | || ||||| Sbjct 1241742 TATCCAAAAAGAATCAACACTCCATTTAGTCTTACGTCTTCGCGGAGG 1241789 Score = 134 bits (148), Expect = 9e-27 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 ||||||||||||| ||||| || || | || || ||||| |||| | || ||||| Sbjct 1239528 TTAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTGTCACCTTGGAGGTTGAGC 1239587 Query 23666 CCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | | || ||| |||| ||| ||||| | || ||| || || ||||| | || ||| Sbjct 1239588 CTTCCGATACTATTGAGAATGTTAAAGC-TAAGATTCAAGATAAGGAAGGAATCCCACCA 1239646 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 |||||||| ||||||||||| || || ||||| || ||||||| ||||| || ||| Sbjct 1239647 GATCAACAACGTTTAATATTCGCTGGTAAACAGCTAGAAGACGGGCGCACATTGTCTGAT 1239706 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| |||||||| || || || || ||||| || || | ||||| || || Sbjct 1239707 TACAATATACAAAAGGAATCTACGTTGCATTTGGTCTTGCGTTTGCGTGGTGG 1239759 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| | || || ||||| || ||| | || || || | | Sbjct 1239761 ATGCAAATTTTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAGCCTTCC 1239820 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||||||||||| | ||| || || || || |||||| | || ||||| || Sbjct 1239821 GACACTGTTGAAAACGTTAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 1239880 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || || || |||||| ||||||| | |||||| | ||||||||| Sbjct 1239881 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACTCTCTCGGATTACAAC 1239940 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||| || || || |||||||| || | ||||| || || Sbjct 1239941 ATACAGAAAGAATCAACCTTGCATTTAGTGTTGCGTTTGCGCGGTGG 1239987 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || | || || ||||| ||||| | || ||||| | | Sbjct 1232572 ATGCAAATTTTTGTCAAGACATTGACTGGCAAAACTATCACCTTGGAGGTTGAGCCTTCC 1232631 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| |||| | || | || || || ||||| | || |||||||| Sbjct 1232632 GATACTATTGAGAATGTTAAGGCTAAGA-TTCAAGATAAGGAAGGAATCCCACCAGATCA 1232690 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||||||| || || || ||||| | ||||||| ||||| || |||||||| Sbjct 1232691 ACAGCGTTTAATCTTCGCTGGTAAACAGTTAGAAGACGGGCGCACATTGTCTGATTACAA 1232750 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||||| || || || || ||||| || ||| | ||||| || || Sbjct 1232751 TATACAAAAGGAATCTACGTTGCATTTGGTCTTACGTTTGCGTGGCGG 1232798 >seq308 Length=190705 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| ||||| || || || ||||| || || || || Sbjct 86851 AATATGCAGATTTTTGTAAAAACCCTTACGGGCAAGACCATTACTCTTGAGGTCGAGCCC 86792 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || ||| |||||| | ||| || ||| |||||||| || | || || || Sbjct 86791 TCTGATACTATTGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 86732 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| || || || || || || |||||| ||||||| | ||||| ||| ||||| Sbjct 86731 CAACAACGATTGATCTTCGCTGGAAAACAATTGGAAGATGGTCGCACATTATCGGATTAT 86672 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || |||||||| ||||| |||||| | || || | |||||||| || Sbjct 86671 AATATTCAAAAAGAATCCACGTTACATCTTGTGTTGCGTTTGCGAGGTGG 86622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338002798718708