Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq53 89.7 4e-13 seq308 87.8 1e-12 >seq53 Length=1361919 Score = 89.7 bits (98), Expect = 4e-13 Identities = 165/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| || |||| | || |||| |||||| |||||||||||||| ||||||||||| | Sbjct 1232572 TGCCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAG 1232513 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 || || |||||||| ||||||||| ||| | || | | || || || | Sbjct 1232512 ACAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAG 1232453 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT- 101188 | | ||||||||||| || ||| ||| |||| | | || || | | ||| Sbjct 1232452 GAATACCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATTGTATCAGATG--GTTC 1232395 Query 101189 -GTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATTATTACAAT 101247 ||| | || || |||||||| |||||||| || | || ||||||||| ||| ||| Sbjct 1232394 CACTTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCATTTTTAGAAT 1232335 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| ||||||||||||||||| || ||||||||||| | | ||| ||||| Sbjct 1241544 CACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACCGTCTTC 1241485 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 ||||||||||| ||| | || | | || || ||| || | |||||||| || Sbjct 1241484 TAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCTTG 1241425 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTT 101206 ||||||| ||| || | | | || |||| | ||| | || | ||||| | | Sbjct 1241424 AATTTTTGCTTTAACGTTTTCGATAGTATCTGATG--GTTCTACCTCCAAAGTAATGGAT 1241367 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 ||||| ||||| ||||| | ||| ||||||||| Sbjct 1241366 TTGCCAGTCAAAGTTTTTACAAAGATTTGCATT 1241334 >seq308 Length=190705 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||||||| | ||||| | || || || ||||||||||||||||| ||||| | Sbjct 86622 CCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATC--CG 86679 Query 101072 ATAGTTTTGGA--ATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| | | || ||||||||||||||| || || | || | | ||||||||| | Sbjct 86680 ATAATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTG 86739 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | || |||||||| ||| || |||||||| | | || || | || | Sbjct 86740 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGA 86799 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | ||||| || |||||||| | ||||| | |||||| ||||| Sbjct 86800 CCTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCAT 86848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409652556984609