Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq184 280 1e-70 >seq184 Length=525875 Score = 280 bits (310), Expect = 1e-70 Identities = 495/716 (69%), Gaps = 18/716 (3%) Strand=Plus/Minus Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433 ||||| || || |||||| ||||||| || || | ||| ||| || || || ||| Sbjct 28974 AGCAAACGATCCGCTACATATTCTATGTATTGACACATACTTTCATTATTCATACCGATT 28915 Query 4434 AATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATT 4493 || | || ||||| || | ||||| ||| || | ||| || | ||||| || || ||| Sbjct 28914 AAATTGACTGGTAGAGCTTCTGTCAGAAATTCCTTTTCAATTTTAACGGCATCGGTTATT 28855 Query 4494 ATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCA 4553 || || ||| ||||| | ||||| | || || ||| ||||| |||| |||| Sbjct 28854 ATTTCCAATATGCGTTCTTTGGTCGGTTTTTGTATCAAATATTTAAACATTAAAACCGCA 28795 Query 4554 AAATCACAATGCAAACCTTCGTCTC-TGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 || || ||||| |||||||| || | || || | | ||| |||||||| |||| || || Sbjct 28794 AATTCGCAATGTAAACCTTCATCGCGTGATATTAA-TTCATTAGAAAATGTTAGACCCGG 28736 Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672 ||||| || | || |||||||||||||| | ||||| ||| ||||||||| || Sbjct 28735 CATTATTCCACGTTTCTTAAGCCAAAATATCGAAGCAAAACTTCCACTAAAGAATATACC 28676 Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGG-ACCCGAACGAGCTG---GCTTTGTCTTTAA 4728 ||| ||||| ||||| |||| | || ||| || || | || || | Sbjct 28675 TTCGACGGCAGCAAAAGCTATGACACGCTCACCAAAATTCGCCGAACGCGATGAT----A 28620 Query 4729 TCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA 4788 |||| ||| ||||| | ||||| || ||||| |||| || || | || || |||| Sbjct 28619 TCCAAGCTAAAGCCCATTCCGCTTTCTTTTTAACTAACGGCATCGTCTCAATGGCATTAA 28560 Query 4789 A----TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 | |||| || |||| || ||| ||| | || || || |||| |||||| Sbjct 28559 AAAGATAATCGCGTTCTTTC----GGATCTGCGATAAATGTTTCAATAAGTAAACTATAC 28504 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 ||||| || |||| |||||| || || || ||||| || |||||||| | |||||| ||| Sbjct 28503 ATTTCCGAGTGTACATTTTCGATGGCTATTTGAAAACCATAAAAGCAACGAGCTTCGGTT 28444 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 ||||||||||| | | |||| | ||| ||||| || || || || || |||||| || Sbjct 28443 ACTTGAACTTCTTGAGAAAAACGTTCCACTAAATTCTCATTAACAATGCCGTCAGATGCC 28384 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAG 5024 |||||||| ||||||||||| || ||||| | |||| ||| | | | | ||| Sbjct 28383 GCAAAAAAAGCCAAAACATGTGAAATAAAATGACGTTCATCATCAGTTAATCGCTCCCAA 28324 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 || | |||| || | |||||| ||||| | |||||||| || ||||| || Sbjct 28323 TGATCAAGATCTGCAGCGAGATCAACCTCTTCCGCCGTCCAAAAAGAAGCTTCAGC 28268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427041007094783