Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq439 183 8e-42 seq724 111 4e-20 >seq439 Length=76666 Score = 183 bits (202), Expect = 8e-42 Identities = 320/466 (69%), Gaps = 0/466 (0%) Strand=Plus/Minus Query 28626 TGCTTACCGATACCAAACTGAAAAACCTGAAGCCTCAGGACAAACTCTATAAAGTTTCTG 28685 ||||||| || || ||||| | |||||| || |||| ||||||||||| ||| | | | Sbjct 76076 TGCTTACAGACACAAAACTAAGAAACCTAAAACCTCGCGACAAACTCTACAAAATCCCCG 76017 Query 28686 ACCGTGACGGGCTGTACGTAGCCGTGCTCATATCAGGCTCTGTCTCGTTCCGCTATGACT 28745 | | |||||||| |||||||| || || | || |||| |||||||||||||||| Sbjct 76016 ATAGAGACGGGCTCTACGTAGCTGTTCTGCCAAGCGGTTCTGCATCGTTCCGCTATGACT 75957 Query 28746 ACAGAATCAACGGCCGCCGGGAAACTCTGGTGATTGGTCAGTATGGTCGTGACGGTATCA 28805 || | || | ||| | || |||||| || ||||||| ||||| ||||||||||| Sbjct 75956 ACCGCATACATGGCAGGCGTGAAACTTTGACGATTGGTAGATATGGAGCTGACGGTATCA 75897 Query 28806 GCCTGGCGGAAGCGCGGGAAGAACTCATTGCGGCTAAAAAGTTGCTCAAGTCAGGCCAGT 28865 || | || ||||| || |||||| | | | || ||||| ||| ||||||| |||| Sbjct 75896 GCTTAGCCGAAGCCCGTGAAGAATTACATACCGCCAAAAAACAGCTAGAGTCAGGTCAGT 75837 Query 28866 CGCCTGCTGCGGCAAAGCGTGACGGTATCAAAAAGATCCGTGGCGCTGAGACATTCGCGG 28925 | |||||||| | ||| || || ||||| || | | || || || | || Sbjct 75836 CACCTGCTGCCGTAAAACGAGAAAATATCAGGCAGCTAAAGGCTGCAGATCGCTTTGAGG 75777 Query 28926 TACATACCGACAGCTATATGAAGCACGTCATTCTGGCTGACAGCACCCGCGCCATGAAGC 28985 |||| | |||||||| || || | ||||| ||||| || ||||||| Sbjct 75776 ACTATACTTTCGCTTATATGAATCATGTGCGATTTGCTGAAAGCACAAAAGCAATGAAGC 75717 Query 28986 AGGCAGTGATCGACCGTGACATACTTCCTGTGCTTGGCAACAAGATGATGGCGGAGATCA 29045 | || || ||||| ||||||||| | ||| || || || || | ||| || || | Sbjct 75716 AAGCGGTTATCGATCGTGACATATTACCTACACTGGGTAAAAAACTTATGCACGAAATAA 75657 Query 29046 CCACATCGATGGTGCGCGATCTGTGCGACAGGATTGTAGAGCGTGG 29091 | || | ||| | || ||||| ||||||| || | ||||| || Sbjct 75656 CTACTACCATGTTACGTGATCTATGCGACAAAATACTCGAGCGCGG 75611 >seq724 Length=1463 Score = 111 bits (122), Expect = 4e-20 Identities = 197/278 (71%), Gaps = 17/278 (6%) Strand=Plus/Minus Query 21114 GTTGTCATAGTGATCA---CCTTTGTAGTTCCGGTTAATCACCACCGCTGAGACCAATCA 21170 ||||||||||| || | |||| ||||| || ||||||||| ||| ||||| Sbjct 1382 GTTGTCATAGTAATGATTTCCTTGTTAGTTAAGGAACATCACCACCTTCGAGGTCAATCT 1323 Query 21171 GATGGTGGTGAACTGTGCAGAGTTGGTC-TTACCGGCTACAAAGGACCCGGCGCACCGTG 21229 |||||||| ||| | ||||| | | |||||||||| |||||||||| | || || Sbjct 1322 TG-GGTGGTGAGCTG-GATGAGTTTGACCTTACCGGCTAACAAGGACCCGGTGAGCCTTG 1265 Query 21230 AGGTGCCCCCACACAGCCCACCATAGAATATGGGTGCTAT----GCTTCACGCATaaaaa 21285 || |||||| ||||||||||| ||| || ||| | | ||||||||||| Sbjct 1264 CGGCTCCCCCATCCAGCCCACCAT----TAT-TCTGATATGGCGGACTGACGCATAAAAA 1210 Query 21286 aaCCGCTCGC-GCG-GTAATGCGCCTCTGTAGTAATCCGGGAGACCAATCCCGGCACTGG 21343 | ||||| | ||| || |||||||| |||| ||||||||| |||||||| ||| | Sbjct 1209 ACACGCTCTCGGCGTGTTATGCGCCTTGTTAGTTATCCGGGAGGTCAATCCCGACACCTG 1150 Query 21344 ATTTTGCCAGTGCCTGATCACTATGGCACAAGAATTAT 21381 | ||||| |||| | ||||| || || | ||||| Sbjct 1149 AATTTGCAGGTGCAGATTGACTATAGCGCATGGATTAT 1112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133507782445164