Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_031117.1 Length=44885 Score E Sequences producing significant alignments: (Bits) Value seq439 127 6e-25 >seq439 Length=76666 Score = 127 bits (140), Expect = 6e-25 Identities = 338/514 (66%), Gaps = 2/514 (0%) Strand=Plus/Minus Query 39388 AAGACCGTGATCTTGTGCGCTCGTGAGTTTCAAGGCTCAATTGAAGATTCTGTACATAAG 39447 || ||||| || | || || || || || || | || ||| || || || |||||| Sbjct 57838 AAAACCGTCATTCTCTGTGCGCGGGAATTGCAGGAATCCATTAGTGACTCAGTGCATAAG 57779 Query 39448 TTATTAGCTGAGACAATAGAGCGTCTTGGCTATTTAAAAGAGTTTGAAATTCAGAATAAA 39507 | || ||||| || || || ||||||||| || ||||| | ||||| || Sbjct 57778 CTTCTACGGGAGACGATTGATCGCCTTGGCTATAGTGCCGAATTTGAGGTGCAGAAAAAC 57719 Query 39508 ACTATTACGCACTTGGGGACAGGTGCGACTTTTGTATTCTATGGAATTAAGAACAACCCA 39567 || || | || | | || || |||| ||| | || | || | ||||| ||| Sbjct 57718 ACCATCATCCATCTTGCTACCGGAACGACATTTATCTTTTTAGGCGTCAAGAATAACGTC 57659 Query 39568 ACAAAGATCAAGTCAATTCAAGGTGTTGGTGT-TGCGTGGATTGAAGAGGCTGAGGCGGT 39626 ||||| | ||||| ||| ||||| ||| | ||| ||| ||||||| || || ||||| Sbjct 57658 ACAAAAGTGAAGTCTGCTCAGGGTGTCGGTATCTGC-TGGGTTGAAGAAGCGGAAGCGGT 57600 Query 39627 AACAAAAAGATCATGGGATATTCTAATTCCGTCTATTCGTGGCGATAAGAACGCAAAGAT 39686 || || || ||||| | || | || || || || || || |||||||| | | Sbjct 57599 GACGAAGGACTCCTGGGACGTCCTGTTGCCCTCAATACGCGGAGACAAGAACGCCGAAGT 57540 Query 39687 TTTTATTACTTTTAACCCTGCCAATATTCTTGATGATACCTATCAAAGATTTATTGTTAA 39746 | ||| | ||||| || ||||||||||||||||| ||||| |||| |||||||| Sbjct 57539 GTGGATTTCCTTTAATCCCAAAAATATTCTTGATGATACGTATCAGCGATTCATTGTTAA 57480 Query 39747 TCCTCCTAAAAACTCATTAGTTTTGAAGGCTAATTACAATAACAATATTTACTTTGATGA 39806 ||| || ||| | | | ||||||| || |||| | ||| || || |||| Sbjct 57479 TCCGCCCAAAGGTGCCATCATCCTGAAGGCCAACTACAGCGATAATCCCTATTTCCATGA 57420 Query 39807 GTCGCCATTGCGTGAAGAAATGGAGGAATGCAAGGAAAAGGATTATGAGCTTTACTTGCA 39866 || ||| | | | || | |||| ||| ||||| || || ||| || ||| || Sbjct 57419 CTCCCCACTCCCTCAACAGATGGCGGAGTGCAAAGAGCGTGACGTTGACCTGTACCGCCA 57360 Query 39867 TATATGGGAAGGCGAACCAGTTGCAGATAGTGAA 39900 ||| ||| ||||| || || | ||||| ||| Sbjct 57359 TATCTGGCTTGGCGAGCCGGTATCTGATAGCGAA 57326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143507586388914