Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq765 208 5e-49 seq689 82.4 5e-11 >seq765 Length=4807 Score = 208 bits (230), Expect = 5e-49 Identities = 445/655 (68%), Gaps = 10/655 (2%) Strand=Plus/Minus Query 64057 CTTTGTTGAATAAATCAGATTTCGGGTA-AGTCTCCCCCGTAGCGGGTTGTGTTTTCAGG 64115 ||||||||||||||||||| | | | | || ||||| |||| | | | | || | Sbjct 649 CTTTGTTGAATAAATCAGAACTTGTGACTACTCCCCCCC-TAGCAGATCGATTGTT-ATA 592 Query 64116 CAATACGCACGCTTTCAGGCATACCTGCTTTCGTCATTTTGTTCAGCGCTCGTACCAGGG 64175 | || || | ||| | ||||| ||| |||||||||||| |||||| |||| | Sbjct 591 CGATCCGGATGCTGTTCGGCATTCCTAACAGCGTCATTTTGTTAAGCGCTTTGACCATCG 532 Query 64176 CCATAGCCTCCGCAACCTGACCATCGTAGTCACGCAGCGTCAG-TGAACCCCCGAACAGC 64234 |||| ||||| | ||||| |||| ||||||||||| | || ||| | ||| | ||| Sbjct 531 CCATTGCCTCACCTACCTGCGCATCATAGTCACGCAGACTTAGATGATCGCCCATA-AGC 473 Query 64235 TGTTTTACCCGGTACATCGCCGTTTCCGCTATCGAGCGACGGTTGTAATCTGTTGTCCAT 64294 ||| | |||| | || || ||||| || | || || || | || | | | | Sbjct 472 GTTTTGAACCGGAATATAGCTGTTTCAGCCACTGAACGTCGATGATAGCCCACTTGCTTT 413 Query 64295 TTCCACCGCGCATTACTCCCGGTCATTCGCTGATTAGCCACTGCACGGTTACGGTCTGCA 64354 ||||| | ||||| ||| | | ||||||| || || || |||||| || Sbjct 412 TTCCATACATCGTTACTGCCGCTTAGAAGCTGATTCGCAACGGCGTAGTTACGCTCATGG 353 Query 64355 TATTCACCGGGCCAGTAACCCGCACCTTTTCGGGGCGGGATAAGCGCGCTGATTTTCTTA 64414 ||| | ||||| || ||| || ||| || || ||||| | || |||||||| Sbjct 352 TATCGGTCTGGCCAATATTGCGCCCCACCTCGTGGAGGAATAAGAGGCCTTATTTTCTTC 293 Query 64415 CGCCGCAGTTCATCGTGACAGAGCCGGGTATCGTAAGCTCCATCGGCGGCGGCTGACCTG 64474 | | |||| |||| |||||| |||||||||||||| ||||| || ||| |||| Sbjct 292 CTCAGCAGAGCATCATGACAGTAGCGGGTATCGTAAGCGCCATCAGCCAACGCTTCCCTG 233 Query 64475 ATTTTCCGGTGGGTTTGCCGGATTAACCCGGGGAAGGCCTCTGAGTCCGTAACGTTGTTC 64534 |||||||| ||| | || || | | || | ||||| | ||||| ||| | Sbjct 232 ATTTTCCGCTGG-TCTGGTTTATCAGAGCTGGTAGGGCCTGAGTATCCGT--CGTACCAC 176 Query 64535 --AGCGACAGGTCAGCGCAGATGATTTCATGTGTTTTACTGTCAACTGCCAGATGCAGCT 64592 ||||| | |||||| ||||| || ||||| || |||||| | |||| |||||||| Sbjct 175 TGAGCGATACGTCAGCACAGATAATCTCATGCATTACACTGTCTGCGGCCATATGCAGCT 116 Query 64593 TACGCCATATACGACGGCGTTCCTGGCCATGCTTTTTGACTTTCCACTCGCCTTCACCGA 64652 ||||||| | | || | || ||||||| | ||||||||| |||||||| || | Sbjct 115 TACGCCACACCCTCCGTCTGTCGGCACCATGCTGTCGGACTTTCCATTCGCCTTCGCCAA 56 Query 64653 AGACCTTCAGCCCGGTGGAATCAATTACCAGGTGTGCGATTTCACCCCGGGTGGG 64707 ||| |||||| ||||| ||||| || || ||| ||||||||| ||||| || Sbjct 55 AGATCTTCAGGCCGGTTCCGTCAATGACTAGAGGTGAGATTTCACCACGGGTCGG 1 >seq689 Length=10880 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/186 (73%), Gaps = 13/186 (7%) Strand=Plus/Plus Query 18027 AACCATAGTTACGGCCTC----GTAAGTTGATAAACAACCT-GCGACCCGCTGCTAAACA 18081 ||||||||| ||||||| || ||| | | ||||| || || ||| ||||||| Sbjct 8835 AACCATAGTGGCGGCCTCCTTCGTGGGTTCTTTCA-AACCTCGCTCCCTGCTTCTAAACA 8893 Query 18082 -GGTGGCAGGACGTGACGGGGTTAGCAGACTGGCACTTACGAAACCAGCAGGCCGAA-GC 18139 |||||| ||||| ||||| |||| |||| ||| | ||| || || ||| | Sbjct 8894 AGGTGGCGAGACGTAACGGGATTAGAAGACCGGCCACGAAGAACCCGGCGAGCCTTTCGG 8953 Query 18140 CTCCCCATC-ACGCCCCACCATAATTC--GGGCGTAACGT-GGTTTA-CGGACACAAAAA 18194 |||||| | ||| |||||||||||| ||||| ||||| |||||| |||||||||||| Sbjct 8954 CTCCCCCGCTACGTCCCACCATAATTTAGGGGCGCAACGTTGGTTTAACGGACACAAAAA 9013 Query 18195 TACCGC 18200 ||||| Sbjct 9014 AACCGC 9019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330892541791066