Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq53 113 1e-19 seq308 95.1 3e-14 >seq53 Length=1361919 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| ||||||||||| ||||| ||||| ||||||| | ||| | |||||||| Sbjct 1234445 GACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCATCTTC 1234386 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||| || |||||||| | | ||||||||| | | || |||||||| || || Sbjct 1234385 CAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTG 1234326 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| | || | | | || ||| ||| ||||| | ||| || ||||| Sbjct 1234325 GATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATGGTTTT 1234266 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | ||| || ||||||| ||||| Sbjct 1234265 ACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 111 bits (122), Expect = 4e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| | ||||| || ||||| || |||||||| | || || | ||| ||||| Sbjct 1239742 GACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTC 1239683 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||| ||| || ||||| || | | || || || | | |||||||||||| ||||| Sbjct 1239682 TAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTG 1239623 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || ||| ||| |||| | | || ||| ||| || || | || | |||||| Sbjct 1239622 AATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGACAGTTTT 1239563 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 || || | ||||||||||||| |||||||||| Sbjct 1239562 CCCAGTCAATGTCTTCACGAAGATCTGCATTTTA 1239529 Score = 111 bits (122), Expect = 4e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| || || || ||||||||||| || ||||||| | ||| | ||| ||||| Sbjct 1241772 GACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGACAGAGTGCGCCCGTCTTC 1241713 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||| || || ||||| | | ||| || || | || || |||||||| ||||| Sbjct 1241712 CAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAAATACCTTCCTTATCTTG 1241653 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| ||| || || || | | || || |||||| || | |||||||||||| Sbjct 1241652 GATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACCTCCAAAGTAATAGTTTT 1241593 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| || | ||| || || |||| |||||| Sbjct 1241592 GCCAGTCAAAGTTTTAACAAAGATTTGCATT 1241562 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || ||||| || ||||||||||| | | ||| | |||||||| | ||| || Sbjct 1239957 GTTGATTCTTTCTGTATGTTGTAATCCGAGAGAGTGCGACCATCTTCCAATTGTTTACCA 1239898 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| | | ||||||||| | | || |||||||| ||||| || || ||| Sbjct 1239897 GCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTAGCTTTA 1239838 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || || |||| ||| |||||| || | |||||| |||||||| || | ||| Sbjct 1239837 ACGTTTTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTAATGGTTTTGCCAGTCAAAGTT 1239778 Query 152088 TTCACGAAGACCTGCAT 152104 || || || | ||||| Sbjct 1239777 TTAACAAAAATTTGCAT 1239761 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| | ||||| || ||||| || |||||||| | || || | ||| ||||| Sbjct 1232781 GACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTC 1232722 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| || |||||||| | | ||| || || | | |||||||||||| ||||| Sbjct 1232721 TAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGGATTCCTTCCTTATCTTG 1232662 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || || ||| |||| | | || ||| ||| || || | || |||||||| Sbjct 1232661 AATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATAGTTTT 1232602 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || | ||||| || || | ||||| Sbjct 1232601 GCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | ||| || ||||| || || |||||||| | | ||| | || ||| Sbjct 1241546 AGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACCGTCT 1241487 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| ||| || || ||||| | | |||||| || | | || ||||| || ||| Sbjct 1241486 TCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCT 1241427 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||||||| ||| || | || | | ||||| ||||| || | |||||| | | Sbjct 1241426 TGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTAATGGAT 1241367 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || | ||| || || |||| |||||| Sbjct 1241366 TTGCCAGTCAAAGTTTTTACAAAGATTTGCATT 1241334 >seq308 Length=190705 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| | || || |||||||| || || ||||| | ||| || | |||||||| Sbjct 86640 ACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGATAATGTGCGACCATCTTCC 86699 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||| || |||||||| | | || ||||| | | ||||| || || || ||| Sbjct 86700 AATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 86759 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||| ||| | || | | || || ||| || ||||||||||| || ||| Sbjct 86760 ATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGACCTCAAGAGTAATGGTCTTG 86819 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || || || || | |||||| || Sbjct 86820 CCCGTAAGGGTTTTTACAAAAATCTGCATATT 86851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153796392723821