Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq53 127 2e-24 seq1 120 3e-22 seq308 116 3e-21 >seq53 Length=1361919 Score = 127 bits (140), Expect = 2e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 111089 AGAGTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAA 111148 ||| | ||||||||||||| || || || || ||||| |||||||| || || | ||| Sbjct 1232333 AGATTCTAAAAATGCAAATCTTCGTAAAGACATTGACTGGCAAAACAATCACTTTAGAAG 1232392 Query 111149 CGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTC 111208 |||||| ||| | ||| | |||||| ||| || ||||||||||| ||| Sbjct 1232393 TGGAACCATCTGATACAATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTC 1232452 Query 111209 CCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGG 111268 | |||||| || | | || | ||| ||||||||| |||||||| || || Sbjct 1232453 CTCCCGATCAGCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGATGGGCGCACATTGT 1232512 Query 111269 CCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 | ||||| ||||||||||||||||| ||| | || || || | |||||||| ||||||| Sbjct 1232513 CTGATTACAATATACAAAAAGAATCAACATTGCACTTGGTTCTACGTCTGCGTGGTGGCA 1232572 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| ||||| ||||| |||||||| ||||| |||| || || Sbjct 1241562 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAAACTATTACTTTGGAGGTAGAGCCGTC 1241621 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| || | | ||| ||| |||||| || || ||||| || | |||||| Sbjct 1241622 GGATACTATCGAAACGGTTAAAGCAAAAATCCAAGATAAGGAAGGTATTTCTCCCGATCA 1241681 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | | || | ||| ||||||||||||||||| ||| || ||||||| || Sbjct 1241682 ACAGCGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGGCGCACTCTGTCCGATTAAAA 1241741 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| ||||||||||| ||||| |||||||| || ||||| ||||| || Sbjct 1241742 TATCCAAAAAGAATCAACACTCCATTTAGTCTTACGTCTTCGCGGAGG 1241789 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| ||||| |||||||||||||| |||| || || | Sbjct 1239761 ATGCAAATTTTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAGCCTTCC 1239820 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || |||||| | || ||| || || || || ||||| ||||| || || Sbjct 1239821 GACACTGTTGAAAACGTTAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 1239880 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | || | || || ||||||||||||||| | ||| | | ||||| || Sbjct 1239881 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACTCTCTCGGATTACAAC 1239940 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 ||||| |||||||| || | ||||||||||||||| |||||||||||| Sbjct 1239941 ATACAGAAAGAATCAACCTTGCATTTAGTGTTGCGTTTGCGCGGTGGCA 1239989 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||| || ||||||||||| ||||| ||||| Sbjct 1239989 ATGCAGATCTTTGTTAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTAGAACCATCG 1240048 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || | | | || ||| ||||||| || |||||||| |||| ||||| Sbjct 1240049 GATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 1240108 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | |||| ||| ||||||||||| ||||| ||| | | ||||| ||| Sbjct 1240109 CAGCGTTTGATTTTTGCTGGCAAACAATTAGAAGACGGCCGCACTCTTTCGGATTACAAT 1240168 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||||| ||||||||| | ||||| ||||||||||| || ||||| Sbjct 1240169 GTACAAAAGGAATCTACATTGCATTTGGTGTTGCGTCTCCGTGGTGG 1240215 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| ||||| ||||| |||||| ||||||| |||| ||||| Sbjct 1241334 AATGCAAATCTTTGTAAAAACTTTGACTGGCAAATCCATTACTTTGGAGGTAGAACCATC 1241393 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| || | | | || ||| ||||||| || |||||||| |||| ||||| Sbjct 1241394 AGATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCA 1241453 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || | | || | ||| ||||||||||| ||||| | ||| | | ||||| || Sbjct 1241454 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGACGGTCGCACTCTTTCGGATTACAA 1241513 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||| |||||||| || | ||||| ||| ||||||| |||||||| Sbjct 1241514 TATACAGAAAGAATCAACTTTGCATTTGGTGCTGCGTCTCCGCGGTGG 1241561 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| ||||| ||||| |||||||||||||| |||| ||||| Sbjct 1240216 AATGCAAATATTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAACCATC 1240275 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| || | | | || || ||||||| || |||||||| |||| || || Sbjct 1240276 GGATACTATCGAAAACGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGACCA 1240335 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || | | || | ||| |||||||| ||||||| | ||| | | || || || Sbjct 1240336 GCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGACGGTCGTACTCTCTCGGACTACAA 1240395 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||| |||||||| || | ||||| ||||||||||| |||||||| Sbjct 1240396 TATACAGAAAGAATCAACTTTGCATTTGGTGTTGCGTCTCCGCGGTGG 1240443 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || |||||||| |||||||| |||||||| || ||||| || || | Sbjct 1234236 ATGCAAATCTTCGTCAAAACTTTGACCGGTAAAACCATCACTTTGGAAGTCGAGCCTTCC 1234295 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| || || || || ||||| ||||| || || Sbjct 1234296 GATACCATTGAAAACGTCAAAGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAG 1234355 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | || | || || ||||||||||||||| ||| | |||||||||| Sbjct 1234356 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTCTCTCCGATTATAAC 1234415 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| || ||||| || ||||| || || || ||||| ||||| Sbjct 1234416 ATTCAAAAGGAGTCTACTCTCCATTTGGTCTTACGCCTGCGTGGTGG 1234462 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||||||||| || ||||| |||||||| || ||| |||| || || | Sbjct 1232572 ATGCAAATTTTTGTCAAGACATTGACTGGCAAAACTATCACCTTGGAGGTTGAGCCTTCC 1232631 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || || ||| || || ||||| | || |||||| Sbjct 1232632 GATACTATTGAGAATGTTAAGGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAA 1232691 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | || | || || ||||| || ||||| || || | ||||| ||| Sbjct 1232692 CAGCGTTTAATCTTCGCTGGTAAACAGTTAGAAGACGGGCGCACATTGTCTGATTACAAT 1232751 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||||| |||||||| | ||||| || || ||| |||| || || Sbjct 1232752 ATACAAAAGGAATCTACGTTGCATTTGGTCTTACGTTTGCGTGGCGG 1232798 >seq1 Length=10097680 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 111096 AAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACC 111155 ||||||||||||||| || ||||| | || |||||||| ||||| ||||| || || Sbjct 7547385 AAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAGCC 7547444 Query 111156 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111215 ||| || ||| | || || |||||| |||||||| ||| |||| || Sbjct 7547445 TTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCAGA 7547504 Query 111216 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111275 ||| ||| | | || | || |||||||||||||||||| ||| || | ||||| Sbjct 7547505 TCAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGATTA 7547564 Query 111276 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||||| |||||||| ||| | ||||| || | ||| |||| ||||| Sbjct 7547565 CAATATACAGAAAGAATCGACATTGCATTTGGTACTTCGTTTGCGAGGTGG 7547615 >seq308 Length=190705 Score = 116 bits (128), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| |||||||| ||||| | || ||||| |||||||| | || || ||| Sbjct 86851 AATATGCAGATTTTTGTAAAAACCCTTACGGGCAAGACCATTACTCTTGAGGTCGAGCCC 86792 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 ||| || ||| | || ||| || ||| |||||||| || |||| ||| Sbjct 86791 TCTGATACTATTGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 86732 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATT 111274 |||||| | | || | || || ||||||||||||||| || | | ||| | |||| Sbjct 86731 CAACAACGATTGATCTTCGCTGGAAAACAATTGGAAGATGGTCGCACATTATCG--GATT 86674 Query 111275 ATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||||| ||||||||||| || ||||| | ||||||||| |||| ||||| Sbjct 86673 ATAATATTCAAAAAGAATCCACGTTACATCTTGTGTTGCGTTTGCGAGGTGG 86622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421802712499576