Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq556 401 2e-107 >seq556 Length=23517 Score = 401 bits (444), Expect = 2e-107 Identities = 998/1493 (67%), Gaps = 38/1493 (3%) Strand=Plus/Minus Query 7931 AATGCCGATTCAACAACTCCCCATGATGAAGGGAATGGGTAAAGACTTCAAGAACGCCGA 7990 |||| |||| ||| | ||| |||| || || | ||||||| | | ||||||| Sbjct 8531 AATGGCGATAATGCAATTACCCCTGATAAAAGGTCTCGGTAAAGCGCGCGATGACGCCGA 8472 Query 7991 TTATATCGACTATCTGCCAGTGAATATGCTGGCAACACCCAAAGAAATCCTTAACAGCAG 8050 |||||||||| |||| || ||||||||||| || ||||| | | || ||| Sbjct 8471 TTATATCGACGCCTTGCCGGTCAATATGCTGGCTACGCCCAAGCCGGTATTGAATGCCAG 8412 Query 8051 CGGCTATCTCCGCTCATTCCCTGGCATTACCA--AACGTTATGATATGAACGGCGTATCG 8108 ||| ||||| ||||| || || || ||| || || | || | ||| || || Sbjct 8411 CGGTTATCTACGCTCGTTTCCCGGTATTGCCCGCAAAGCA--GAGGTCGCCGGGGTGTCC 8354 Query 8109 CGTGGAGTTGAGTACAACACCGCTCAGAATGCTGTTTATCGTGTT-TGTGGTGGCAAGCT 8167 || || ||| ||||||| ||| | | || | |||||||| | || | ||| | Sbjct 8353 CGAGGCGTTCAGTACAATACCCATGAAAAGACGGTTTATCGCGGGCTGGGAAATCAAT-T 8295 Query 8168 CTACAAAGG--AGAAAGCGAAGTTGGTGATGTTGCCGGAAGTGGTCGCGTATCA--ATGG 8223 |||||||| | ||| ||| | | ||| |||| |||| |||||| |||| |||| Sbjct 8294 ATACAAAGGCCATAAACCGA--TAGCGGATATTGCTGGAAAGGGTCGC--ATCAGCATGG 8239 Query 8224 CACATGGTCGGACATCA--CAGGCGGTAG--GCGTTAATGGCCAACTGGTCGAGTATCGC 8279 | | | || || || |||||||||| ||| | || || || || || Sbjct 8238 CGTTTAGCCG--CAACAGTCAGGCGGTAGCAGCGGCA--GGAAAAATGACGCTCTACCGT 8183 Query 8280 TATGATGGCACGGTTAAAACCGTCTCAAACTGGCCTGCAGACAGCGGATTCACGCAGTAT 8339 || ||||||||||| ||||| | ||||||||| ||||| || |||||| || Sbjct 8182 TACGATGGCACGGTAAAAACACTGGAAAACTGGCCGAAAGACAAAAAATACACGCAATAC 8123 Query 8340 GAGTTAGGTTCAGTGCGTGACATTACGCGCTTACGTGGGCGTTATGCGTGGTCAAAAGAC 8399 || | ||| | ||||| || || | || || || ||||||| |||| |||||| Sbjct 8122 GATATTGGTACCGTGCGGGATATGTGCCATTTGCGCGGACGTTATGTCTGGTGTAAAGAC 8063 Query 8400 GGCACTGATTCATGGTT--TATCACTGACCTCGAAGATGAATCGCATCCTGACCGCTACA 8457 ||||| ||| || || | |||| || | ||||||||||| || |||||||||||| Sbjct 8062 GGCACCGAT--ATTTTTGGTGTCACCGATTTGGAAGATGAATCTCACCCTGACCGCTACC 8005 Query 8458 GCGCACAATATCGCGCAGAGTCGCAGCCTGACGGCATCATCGGCATCGGAACATGGAGAG 8517 |||| | |||||||| || || || || |||||||| ||||| || | | ||| | | Sbjct 8004 GCGCGCTGTATCGCGCCGAATCACAACCCGACGGCATTATCGGTATTGATAGCTGGCGCG 7945 Query 8518 ACTTCATCGTCTGCTTTGGTTCGTCAACGATAGAGTATTTCTCCCTGACAGGCGCAACCA 8577 | || || ||||||||||| |||| || || || ||||| |||||||| || || || Sbjct 7944 ATTTTATTGTCTGCTTTGGCGCGTCCACCATTGAATATTTTTCCCTGACCGGGGCGGCCG 7885 Query 8578 CCGCTGGC--GCTGCGTTGTATGTCGCACAGCCATCGTTGATGGTACAGAAGGGCATTGC 8635 || ||| | || | |||| ||||||||| | | ||||| |||| |||||||| Sbjct 7884 ACG--GGCAATCCGCCATCTATGCCGCACAGCCTGCACTCATGGTCGAGAAAGGCATTGC 7827 Query 8636 CGGAACATACTGTAAAACGCCGTTCGCTGATTCATACGCCTTTATCAGTCATCCGGCTAC 8695 ||| || |||| || || | | ||| ||| | | | | ||||| |||| ||| || Sbjct 7826 CGGGACCCACTGCAAGACCCGGCTCGGCGATGCTCATGTGATCATCAGCCATCAGGCCAC 7767 Query 8696 TGGCGCACCTTCCGTCTACATCATCGGTTCAGG-GCAGGCATCGCCAATTGCGACCGCCA 8754 ||||| || || || ||| | || ||||| |||||| | | ||||| || |||| Sbjct 7766 CGGCGCGCCGTCGGTATACCTGAT-TAATCAGGCGCAGGCGACATCGATTGCCACGGCCA 7708 Query 8755 GTATTGAGAAAATTATCCGCTCATATACCGCTGAAGAAATGGCGACGGGTGTGATGGAGA 8814 || ||||||||| | ||| || || || ||| |||||| | || ||||| | Sbjct 7707 CCATCGAGAAAATTCTACGCAGCTACACACACGATGAACTGGCGAGCGCCGTCATGGAAA 7648 Query 8815 CTTTGCGCTTCGATTCTCATGAGCTTCTGATTATTCATCTCCCTCGCCATGTTCTGGTTT 8874 | | || ||||| || || | || |||| ||| | || || || || || || Sbjct 7647 CCGTCCGTTTCGACAGCCACGAATTAGTGCTTATCCATTTGCCGCGACAGGTGTTGTGTT 7588 Query 8875 ACGACGCATCGTCCAGCCAGAACGGACCTCAGTGGTGTGTGCTGAAAACCGGGCTTTACG 8934 | ||||| || ||| ||||||||| || || ||| | |||||||||| || |||| Sbjct 7587 ATGACGCCGCGGCCAACCAGAACGGGCCGCAATGGAGCCTGCTGAAAACGGGCTTTTATC 7528 Query 8935 ATGATGTATATCGCGGCGTCGACTTCATGTACGAAGGAAACCAGATAACGTGCGGCGACA 8994 | | | ||||||||| |||| || |||| | | | || | || || ||||| | Sbjct 7527 ACGCTCCCTATCGCGGCATCGATTTTATGTTTGCCGACCATCACCTCACCTGTGGCGATA 7468 Query 8995 AATCAGAAGCGGTGGTCGGACAATTGCAATTCGACATCAGCAGC-CAGTACGACAAACAA 9053 || || || | |||| ||| | | || | |||| | || || || || |||| Sbjct 7467 AACACGATGCCCTCCTCGGCCAACTTGATTTTG-CATCTTCTGCGCAATATGAAAAACCG 7409 Query 9054 CAAGAACACCTACTGTTTACGCCCCTTTTCAAAGCAGATAACGCCAGATGCTTCGACCTT 9113 || || || | || | ||| || |||||||| |||||||| ||| | || || || Sbjct 7408 CAGGAGCATGTTCTCTATACCCCGCTTTTCAAGGCAGATAATGCCCGCGTATTTGATTTT 7349 Query 9114 GAGGTTGAATCATCCACTGGTGTTGCTCAATACGCTGACCGCCTGTTCCTGTCTGCAACA 9173 || | || |||| || || || || || ||| |||||||| ||||| || || || Sbjct 7348 GAACTGGAGGCATCAACCGGCGTGGCGCACATCGCCGACCGCCTCTTCCTCTCCGCCACC 7289 Query 9174 ACTGACGGCATCAATTACGGTCGTGAACAGATGATTGAGCAGAACGAGCCGTTTGTGTAC 9233 | |||||||| ||| || || |||||||||||| | || || | |||||||| ||| Sbjct 7288 GCCGACGGCATGCATTTTGGCCGCGAACAGATGATTAACCAAAATGCGCCGTTTGCGTAT 7229 Query 9234 GACAAGCGCGTTTTATGGAAACGTGTTGGGCGCATTCGTCGATTAATCGGATTCAAACTG 9293 ||| |||| || | ||| || ||||| ||| | | |||| || ||| | Sbjct 7228 GACCAGCGAATTCTCTGGCGGCGGGTTGGCTACATCAGAAAAAATGTCGGCTTTAAAGTA 7169 Query 9294 CGAGTAATCACCAAATCACCAGTAACACTATCCGGGTGTCAAATTCGTCTGGAGTAAAAT 9353 || || |||||| ||| || || || || ||||| ||||| || | |||| || Sbjct 7168 CGGGTGATCACCTCATCGCCCGTGACGCTCTCCGGTTGTCAGATAAGGATGGAATA---- 7113 Query 9354 ATGGCAGACCCGTCACTTAATAATCCTGTCGTTATTCAGGCCACCCGTCTCGA 9406 |||||| || | | |||||||| || | || || |||| || || || Sbjct 7112 ATGGCAAACGATACGCCAAATAATCCCGTGGAAATACACACCACGCGCCTTGA 7060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129293465071110