Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq184 284 1e-71 seq127 104 2e-17 seq150 89.7 5e-13 >seq184 Length=525875 Score = 284 bits (314), Expect = 1e-71 Identities = 478/689 (69%), Gaps = 2/689 (0%) Strand=Plus/Minus Query 23343 ATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTAC 23402 ||| |||||| |||| || ||||||||||| |||| || ||||| |||| || || Sbjct 28966 ATCCGCTACATATTCTATGTATTGACACATACTTTCATTATTCATACCGATTAAATTGAC 28907 Query 23403 TGGAATCGCATCATATAAGAA-TAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAA 23461 ||| | || || | | |||| | |||||||| ||| ||||| | ||||||| | Sbjct 28906 TGGTAGAGCTTC-TGTCAGAAATTCCTTTTCAATTTTAACGGCATCGGTTATTATTTCCA 28848 Query 23462 CAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAATCAC 23521 || ||||| | ||| | | | ||||| ||||||| |||| ||||| || | Sbjct 28847 ATATGCGTTCTTTGGTCGGTTTTTGTATCAAATATTTAAACATTAAAACCGCAAATTCGC 28788 Query 23522 AATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATC 23581 |||||| |||||||| | || ||||||||||||||||||| || ||||||| || Sbjct 28787 AATGTAAACCTTCATCGCGTGATATTAATTCATTAGAAAATGTTAGACCCGGCATTATTC 28728 Query 23582 CTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAG 23641 | ||||| |||| ||||||||| | |||||| ||| |||||| ||||| || || | Sbjct 28727 CACGTTTCTTAAGCCAAAATATCGAAGCAAAACTTCCACTAAAGAATATACCTTCGACGG 28668 Query 23642 CCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttG 23701 | ||||| || | | ||| |||||| | || | || ||||| | | Sbjct 28667 CAGCAAAAGCTATGACACGCTCACCAAAATTCGCCGAACGCGATGATATCCAAGCTAAAG 28608 Query 23702 TCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTT 23761 ||| | || ||| ||| || || || || ||||| || || || ||| || Sbjct 28607 CCCATTCCGCTTTCTTTTTAACTAACGGCATCGTCTCAATGGCATTAAAAAGATAATCGC 28548 Query 23762 TTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATAT 23821 ||||| ||||| ||| |||| ||||| ||||||||||||||||| || || | || Sbjct 28547 GTTCTTTCGGATCTGCGATAAATGTTTCAATAAGTAAACTATACATTTCCGAGTGTACAT 28488 Query 23822 TTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAA 23881 |||| || || || ||||| |||||||| || | |||||| | | |||||| || | | Sbjct 28487 TTTCGATGGCTATTTGAAAACCATAAAAGCAACGAGCTTCGGTTACTTGAACTTCTTGAG 28428 Query 23882 AAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAA 23941 |||| | || ||||||| || |||||||| || ||| || ||||| ||||| | || Sbjct 28427 AAAAACGTTCCACTAAATTCTCATTAACAATGCCGTCAGATGCCGCAAAAAAAGCCAAAA 28368 Query 23942 CATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTG 24001 ||| | |||||||| | ||||||| | |||| | ||||| || || |||| | Sbjct 28367 CATGTGAAATAAAATGACGTTCATCATCAGTTAATCGCTCCCAATGATCAAGATCTGCAG 28308 Query 24002 ATAAATCAACTTCATCAACTGTCCAAAAA 24030 | |||||| || || | ||||||||| Sbjct 28307 CGAGATCAACCTCTTCCGCCGTCCAAAAA 28279 >seq127 Length=755962 Score = 104 bits (114), Expect = 2e-17 Identities = 124/163 (76%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 139436 TACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATGG 139495 |||| |||||||| |||||||| |||||||| ||| | |||||||||||||| || |||| Sbjct 123838 TACACACAAAATTGTGGATTGTGGATAATAAGCATTTTTATATTGGAAGTGCGAATATGG 123897 Query 139496 ACTGGCGATCACTAACTCAAGTAAAAGAATTAGGTATCACAATTTATAATAATTC-TTGT 139554 | ||| |||| |||||||||| || || ||||| || | ||||| | | | || Sbjct 123898 ATTGGAGATCTTTAACTCAAGTCAAGGAGTTAGGGAT-TCTTGGTATAA-ATTGCAAAGT 123955 Query 139555 ATT-GCTAGTGAACTAATGAAAATATTTAACATATATATGTAT 139596 ||| ||| | || | |||||||||||||| |||| |||| Sbjct 123956 ATTAGCTGGAGACTTTATGAAAATATTTAATGAATATTGGTAT 123998 >seq150 Length=562241 Score = 89.7 bits (98), Expect = 5e-13 Identities = 134/187 (72%), Gaps = 5/187 (3%) Strand=Plus/Minus Query 128489 ACCAGGTAAAAGAAAATGGTTAAAGGTAAAAAGGGATTATTTAAATAATGGATCAATGGC 128548 ||| ||||||||| ||| | ||||| || | ||||| ||| || | ||| |||||| Sbjct 103047 ACCTGGTAAAAGAGGCTGGATCAAGGTGAAGAAAGATTACTTATATCAAGGAAAAATGGC 102988 Query 128549 AGATTCTGCTGATTTAGTTGTGTTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGG 128608 ||| ||||||||||||| || ||||| || | ||||| ||||||| | ||||| Sbjct 102987 TGATACTGCTGATTTAGTAGTTTTGGGGGCCTCATATGGCTCGGGTAAAA---AAGGAGG 102931 Query 128609 AATAAAATCTATATTTCTTATGGGATGTTATGATAA-AGAAACAGATACATGGAAAACTG 128667 |||| || || || ||||| ||||| ||||| | || || ||||||||| | Sbjct 102930 AATACTTAGCATTTTCCTGATGGGCTGTTACGATAACCGTGAC-CATTTATGGAAAACGG 102872 Query 128668 TTACAAA 128674 | ||||| Sbjct 102871 TAACAAA 102865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521477237791400