Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq53 104 2e-17 >seq53 Length=1361919 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || |||| || || || ||||||||| ||||| |||||| Sbjct 1234465 ATACCACCACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCG 1234406 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | ||| || | || |||| || || || || ||||||||||||||||| |||| Sbjct 1234405 GAGAGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGG 1234346 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 || | ||||||||| ||| ||||| |||| | ||| | ||||| |||| | || Sbjct 1234345 GGAATACCTTCCTTATCCTGGATCTTA-GCTTTGACGTTTTCAATGGTATCGGAAGGCTC 1234287 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| || || || || || || | || || |||||||||||||| Sbjct 1234286 GACTTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || ||||| || |||||||| | | | |||| | || ||||| || || || |||||| Sbjct 1232534 TCTTTTTGTATATTGTAATCAGACAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAG 1232475 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||||||||||||||| | ||| | |||||| || || ||||| ||||| | || Sbjct 1232474 ATCAAACGCTGCTGATCGGGAGGAATACCTTCTTTGTCTTGGATCTT-TGCTTTTACATT 1232416 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || || || | | |||||| || | || || || || || || | ||||| || Sbjct 1232415 TTCAATTGTATCAGATGGTTCCACTTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTAC 1232356 Query 44326 GAAGATTTGCAT 44337 |||||||||||| Sbjct 1232355 GAAGATTTGCAT 1232344 Score = 100 bits (110), Expect = 2e-16 Identities = 168/239 (70%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| || | || | |||||||| || | || |||||||| | || Sbjct 1240225 TATTTGCATTCCACCACGGAGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATT 1240166 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 |||||| | || ||| |||| || | || || || ||||| |||||||||||||| Sbjct 1240165 GTAATCCGAAAGAGTGCGGCCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTG 1240106 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGG 44279 ||||| ||| | ||||| |||| | | | || ||||| || | || | || || || | Sbjct 1240105 ATCTGGAGGAATACCTT-CTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCG 1240047 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||| || |||| ||||| || ||||| || | || || || ||||| |||||| Sbjct 1240046 ATGGTTCTACTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCATG 1239988 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || |||||||| || ||||||| || |||| |||| |||| || || || |||||| Sbjct 1241753 TCTTTTTGGATATTTTAATCGGACAGAGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAG 1241694 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-TGT 44265 ||||||||||| ||||| | || | ||||||||| || || || ||||| || || Sbjct 1241693 ATCAAACGCTGTTGATCGGGAGAAATACCTTCCTTATCTTGGAT-TTTTGCTTTAACCGT 1241635 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || || || | | || ||||||| ||||| || || || || | || || || Sbjct 1241634 TTCGATAGTATCCGACGGCTCTACCTCCAAAGTAATAGTTTTGCCAGTCAAAGTTTTAAC 1241575 Query 44326 GAAGATTTGCAT 44337 ||||||||||| Sbjct 1241574 AAAGATTTGCAT 1241563 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || | |||||||| || | || || || || || ||||| || Sbjct 1240447 CATTCCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTC 1240388 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || |||| |||||||| || || |||||||||||||||||||| |||| Sbjct 1240387 CGAGAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGG 1240328 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGGATT 44285 ||| | ||||| |||| | | | || ||| | || | || | || || || | | || Sbjct 1240327 AGGAATACCTT-CTTTATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTT 1240269 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| ||||| || || || || | || || || || |||||||| Sbjct 1240268 CTACCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| || | ||| |||||||| || ||||| Sbjct 1239766 TTGCATACCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTA 1239707 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | | | |||| |||| || ||||| || || || || || ||||| || ||||| Sbjct 1239706 ATCAGACAATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATC 1239647 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | |||||||| || ||||| |||| || ||| | || || |||| | Sbjct 1239646 TGGTGGGATTCCTTCCTTATCTTGAATCTTA-GCTTTAACATTCTCAATAGTATCGGAAG 1239588 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||| || | || || || || | |||||||||||||| ||||| Sbjct 1239587 GCTCAACCTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 1239533 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || | || ||||| || | || || || || || ||||| Sbjct 1241568 TTGCATTCCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTA 1241509 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | || ||| |||| || | || || || ||||||||||||||||||||||| Sbjct 1241508 ATCCGAAAGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATC 1241449 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGG 44282 || ||| | ||||| |||| | | | || ||||| || | || | || || || | | Sbjct 1241448 TGGAGGAATACCTT-CTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATG 1241390 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||| ||||| | || || || | || || || ||||||||||| Sbjct 1241389 GTTCTACCTCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || || || ||||||||||| | ||| ||| | || |||| || || || || ||| Sbjct 1239951 TCTTTCTGTATGTTGTAATCCGAGAGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAG 1239892 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-T 44265 |||||||||||||| |||| || | ||||||||| || ||||| |||| || | | Sbjct 1239891 ATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTT-AGCTTTAACGTT 1239833 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | | ||||||| | || ||||||| ||||| || || || || | || || || Sbjct 1239832 TTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAAC 1239773 Query 44326 GAAGATTTGCAT 44337 || |||||||| Sbjct 1239772 AAAAATTTGCAT 1239761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359983156430667