Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq308 141 2e-28 seq53 134 3e-26 seq1 134 3e-26 >seq308 Length=190705 Score = 141 bits (156), Expect = 2e-28 Identities = 166/223 (74%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 177911 GGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT 177970 ||||| ||| | || ||||| || ||||| || || || || || || || || ||||| Sbjct 86857 GGTTACAATA-TGCAGATTTTTGTAAAAACCCTTACGGGCAAGACCATTACTCTTGAGGT 86799 Query 177971 GGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC 178030 || ||| || || || || || || ||| ||||||||||||||||| ||||| || Sbjct 86798 CGAGCCCTCTGATACTATTGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCC 86739 Query 178031 TCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGC 178090 || ||||| |||||| | |||||||| |||||||| | |||||||| | || | | Sbjct 86738 ACCCGACCAACAACGATTGATCTTCGCTGGAAAACAATTGGAAGATGGTCGCACATTATC 86679 Query 178091 CGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||||||| | ||||||||||| || | |||||||| ||| Sbjct 86678 GGATTATAATATTCAAAAAGAATCCACGTTACATCTTGTGTTG 86636 >seq53 Length=1361919 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | || || ||||| ||||| | || || || || || Sbjct 1234239 CAAATCTTCGTCAAAACTTTGACCGGTAAAACCATCACTTTGGAAGTCGAGCCTTCCGAT 1234298 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| ||||| ||||| || ||||| || || || |||||||| Sbjct 1234299 ACCATTGAAAACGTCAAAGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAGCAG 1234358 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | ||||| ||||||||||| | Sbjct 1234359 CGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTCTCTCCGATTATAACATT 1234418 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||| || || || || ||| | || || Sbjct 1234419 CAAAAGGAGTCTACTCTCCATTTGGTCTT 1234447 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || || ||||| || || | ||||| ||| || || Sbjct 1240220 CAAATATTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAACCATCGGAT 1240279 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||| ||||| || |||||||| || ||||| |||||||| Sbjct 1240280 ACTATCGAAAACGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGACCAGCAG 1240339 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || |||||||| ||||| || | ||||| | || || || | Sbjct 1240340 CGTTTGATCTTTGCTGGCAAACAGCTGGAAGACGGTCGTACTCTCTCGGACTACAATATA 1240399 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || ||||||||||| ||||| | || ||| | ||| Sbjct 1240400 CAGAAAGAATCAACTTTGCATTTGGTGTTGCGTCTC 1240435 Score = 125 bits (138), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||| || || | || || ||||| ||||| | || |||||| Sbjct 1232341 AAAATGC---AAATCTTCGTAAAGACATTGACTGGCAAAACAATCACTTTAGAAGTGGAA 1232397 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || ||| |||||| || ||||||||||| || ||||| Sbjct 1232398 CCATCTGATACAATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCC 1232457 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || | ||||| || || ||||| || |||||||| | || | | ||| Sbjct 1232458 GATCAGCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGATGGGCGCACATTGTCTGAT 1232517 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 || || | ||||||||||||||| |||| |||| || Sbjct 1232518 TACAATATACAAAAAGAATCAACATTGCA-CTTGGTT 1232553 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || || ||| | || || | ||||| ||| ||||| Sbjct 1241338 CAAATCTTTGTAAAAACTTTGACTGGCAAATCCATTACTTTGGAGGTAGAACCATCAGAT 1241397 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| ||| ||||| || |||||||| || ||||| || ||||| Sbjct 1241398 ACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAG 1241457 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | ||||| || | |||||| | ||||| || | Sbjct 1241458 CGTTTGATCTTTGCTGGCAAACAATTAGAAGACGGTCGCACTCTTTCGGATTACAATATA 1241517 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||||||||| ||||| Sbjct 1241518 CAGAAAGAATCAACTTTGCAT 1241538 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||| | || || ||||| || || | ||||| || || ||| Sbjct 1239764 CAAATTTTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAGCCTTCCGAC 1239823 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || ||||| ||| ||||| || || || ||||| || || || |||||||| Sbjct 1239824 ACTGTTGAAAACGTTAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAGCAG 1239883 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | ||||| | ||||| ||| | Sbjct 1239884 CGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACTCTCTCGGATTACAACATA 1239943 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||||||||||| ||||| | || ||| Sbjct 1239944 CAGAAAGAATCAACCTTGCATTTAGTGTTG 1239973 Score = 113 bits (124), Expect = 1e-19 Identities = 158/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 ||||||||| | || |||||||| || | || || ||||| ||||| | ||||| | Sbjct 1239528 TTAAAATGC---AGATCTTCGTGAAGACATTGACTGGGAAAACTGTCACCTTGGAGGTTG 1239584 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 | || || || || ||||| || ||| |||||||| || || ||||||||||| | Sbjct 1239585 AGCCTTCCGATACTATTGAGAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCAC 1239644 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || || ||||| | || ||||| || |||||||| ||||| || | || | | | Sbjct 1239645 CAGATCAACAACGTTTAATATTCGCTGGTAAACAGCTAGAAGACGGGCGCACATTGTCTG 1239704 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||| || | ||||| ||||| || ||||| | || ||| Sbjct 1239705 ATTACAATATACAAAAGGAATCTACGTTGCATTTGGTCTTG 1239745 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || || ||||| || || | ||||| || || || Sbjct 1241566 CAAATCTTTGTTAAAACTTTGACTGGCAAAACTATTACTTTGGAGGTAGAGCCGTCGGAT 1241625 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| | || ||| ||| || || || || ||||| || |||| || || || Sbjct 1241626 ACTATCGAAACGGTTAAAGCAAAAATCCAAGATAAGGAAGGTATTTCTCCCGATCAACAG 1241685 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | ||||| || | ||||| ||||||| || || Sbjct 1241686 CGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGGCGCACTCTGTCCGATTAAAATATC 1241745 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||||||||||||||| ||| | || || Sbjct 1241746 CAAAAAGAATCAACACTCCATTTAGTCTT 1241774 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || || ||||| |||||| | ||||| || || || Sbjct 1232575 CAAATTTTTGTCAAGACATTGACTGGCAAAACTATCACCTTGGAGGTTGAGCCTTCCGAT 1232634 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||| || || ||||||||||| || || || || Sbjct 1232635 ACTATTGAGAATGTTAAGGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAACAG 1232694 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || |||||| | ||||| || | || | | ||||| || | Sbjct 1232695 CGTTTAATCTTCGCTGGTAAACAGTTAGAAGACGGGCGCACATTGTCTGATTACAATATA 1232754 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||| ||||| || ||||| | || || Sbjct 1232755 CAAAAGGAATCTACGTTGCATTTGGTCTT 1232783 >seq1 Length=10097680 Score = 134 bits (148), Expect = 3e-26 Identities = 156/210 (74%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||||||||| |||||||| || || ||||| || || | || || || Sbjct 7547386 AAAATGC---AAATTTTCGTTAAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAG 7547442 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || || || ||||| || |||||||||||||| || || ||||| Sbjct 7547443 CCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCA 7547502 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || |||||||| | |||||||| || ||||| | |||||||| ||||| | | ||| Sbjct 7547503 GATCAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGAT 7547562 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || | || |||||||| ||| ||||| Sbjct 7547563 TACAATATACAGAAAGAATCGACATTGCAT 7547592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203705736947294