Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq53 98.7 9e-16 seq308 86.0 6e-12 >seq53 Length=1361919 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || ||||| |||| ||| || || |||||| ||||||||||| |||||| Sbjct 1234462 CCACCACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAG 1234403 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | || || || ||||| |||| ||||| ||||| | |||| Sbjct 1234402 AGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 1234343 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| || | || |||| ||| | | || ||| | ||| || Sbjct 1234342 ATACCTTCCTTATCC-TGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGAC 1234284 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || |||||||| |||| || || ||||| || ||||| Sbjct 1234283 TTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 >seq308 Length=190705 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || | ||| ||||| ||||| | |||| || || ||||| ||||| || || Sbjct 86622 CCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGAT 86681 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | || || || ||||| |||| || |||||||| | ||| Sbjct 86682 AATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGA 86741 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814 | | ||| |||||| ||| | || |||| || || ||| || | ||| || Sbjct 86742 ATTCCCTCTTTGTCC-TGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGAC 86800 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||||| || || ||||| ||||||||||| || Sbjct 86801 CTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCATATT 86851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462294459201200