Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq357 221 1e-52 seq528 104 2e-17 >seq357 Length=326794 Score = 221 bits (244), Expect = 1e-52 Identities = 418/602 (69%), Gaps = 10/602 (2%) Strand=Plus/Plus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTAT-AAGACGTA 16856 ||| || ||| |||||||||||| ||||| ||||| |||||| || || ||| || | Sbjct 32059 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCG-A 32117 Query 16857 CCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCC-TTAATAATACTA 16915 | || | || || |||||||| || || || ||| || || ||| || | | | Sbjct 32118 CTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTCCA 32177 Query 16916 GCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCG 16975 | | ||||| | | |||| | ||| | | |||||||||||| | || || || Sbjct 32178 AAATC-CGTTCTTTGCTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCA 32236 Query 16976 CAATGTAATCCCTCGTCTC-TGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 || || || || || || | || | || | ||| ||||| || || || || ||||| | Sbjct 32237 CAGTGCAAGCCTTCATCGCGTGAT-ATCATTTCATTAGAGAACGTTAAACCTGGCATTAT 32295 Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 ||| |||||||||| ||||||||||| ||||| |||| |||||||||||| ||||| Sbjct 32296 TCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGAC 32355 Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCATTTCT 17153 || || || || || | ||||| || | | || || | || ||||| Sbjct 32356 GGCAGCGAAAGCTATAACACGTTCACCGAAATTAGC-CGAATGCGATGATATCCAAGCTA 32414 Query 17154 GCACCCACTCGGCTTTTTGCTTTATGCAAT-CCATCGTTTCTATGGCCTTAAATAATTTC 17212 | |||| || || || | | ||| |||| ||| || || ||||| ||||||| | Sbjct 32415 GTGCCCATTCCGCCTTCTTC-TTAACCAATGGCATTGTCTCAATGGCATTAAATAGATAT 32473 Query 17213 TCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGT 17272 || ||||| | || | ||||| || ||||| |||| || |||||||| |||||| Sbjct 32474 TCCTTTTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGT 32533 Query 17273 ATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 | || |||||||| || ||||| || |||||||| || ||||| | ||||||||| || Sbjct 32534 ACATTTTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCTCT 32593 Query 17333 ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCC 17392 | | ||||||||| ||| ||| || || || || || ||| || || ||||| ||| Sbjct 32594 TGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCC 32653 Query 17393 AA 17394 || Sbjct 32654 AA 32655 >seq528 Length=219945 Score = 104 bits (114), Expect = 2e-17 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 || || || || ||||||||||||||||| || ||| |||| ||||| || || || Sbjct 31209 CCGACATAACCATTGGGATCCGTTCCATCCAAACTATATCTATCATTTAAA-AG-TAGAG 31266 Query 119921 ACGCTT--AACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACA 119978 | || || || ||| || | | |||||| | || ||||||||||| |||| Sbjct 31267 AAAATTCCAAAGCGTCTTCCGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATACA 31326 Query 119979 TACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATA 120038 |||| || | || ||||||||||| || || | || ||| ||||| || | |||||| | Sbjct 31327 TACGCAAAAAACCGTGCATTTTACCCTCTCGCATCAATTGCAGTTGAGCTGAGTTCCACA 31386 Query 120039 AGGGATCGTGTGTACGGGCGTGTTCTAA 120066 || |||||| |||||||| || || || Sbjct 31387 AGTCATCGTGGGTACGGGCCTGCTCGAA 31414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517530105978600