Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq357 242 4e-59 seq528 100 3e-16 >seq357 Length=326794 Score = 242 bits (268), Expect = 4e-59 Identities = 482/704 (68%), Gaps = 15/704 (2%) Strand=Plus/Plus Query 16026 TAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTA 16085 |||| || | ||| || ||| |||||||||||| |||||| |||| || || || | Sbjct 32050 TAACAAA-CGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAA 32108 Query 16086 T-AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTA 16144 | |||||| || || | || | ||| ||||| | || ||| || ||| || ||| | Sbjct 32109 TTAAGTCG-ACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATCTGTT 32167 Query 16145 ATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACAC 16204 || || || ||| || |||| | || | | ||||||||||||| | Sbjct 32168 ATTATTTCCAAAATCCGTTCTTTGCTCGGTTTTTGTATCAAATGTTTAAACATTAATACC 32227 Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTC-TGCTGATAAGTTCGTTGGAAAAAGTTAACCC 16263 || || || || || | ||||| || | || | || | ||| || || || ||||| || Sbjct 32228 GCAAATTCACAGTGCAAGCCTTCATCGCGTGAT-ATCATTTCATTAGAGAACGTTAAACC 32286 Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATAT 16323 ||||||| |||| |||||||||| ||| ||||||| ||| || ||| ||||||||| Sbjct 32287 TGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTCCCACTAAAGAATAT 32346 Query 16324 ACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA-- 16381 ||| || || | || ||||| || | ||||| || | |||| | | ||| Sbjct 32347 ACCTTCGACGGCAGCGAAAGCTATAACACGTTCACCGAAATTAGCCG----AATGCGATG 32402 Query 16382 --ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC-CATCGTTTCTATGGCC 16438 ||||| || ||||||| || || | | ||| |||| ||| || || ||||| Sbjct 32403 ATATCCAAGCTAGTGCCCATTCCGCCTTCT-TCTTAACCAATGGCATTGTCTCAATGGCA 32461 Query 16439 TTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 ||||| | | || ||||| | ||| | ||||| || || || |||||||| ||| Sbjct 32462 TTAAATAGATATTCCTTTTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAACTATAC 32521 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCT 16558 ||||| ||||||| || || ||||| || ||||| ||||| ||||| || || || | | Sbjct 32522 ATTTCCGAGTGTACATTTTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTCGGTT 32581 Query 16559 ATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCA 16618 ||||| || || | ||||||||||| | | |||||||| || ||||| || ||| Sbjct 32582 ATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCC 32641 Query 16619 GCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAA 16678 |||||||| ||||| | ||| ||| |||| |||| || | | || |||| Sbjct 32642 GCAAAAAAAGCCAAAACGTGTGAAATAAAATGACGTTCGCCATTACTTAACCGATTCCAA 32701 Query 16679 TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAA 16722 || | | |||||| || | || |||||||||| |||||||| Sbjct 32702 TCGTCGATATCTTTAGAGAGGTCAACTTCTTCTGCAGTCCAAAA 32745 >seq528 Length=219945 Score = 100 bits (110), Expect = 3e-16 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATACAG 119073 || || || || |||||||| ||||| || || || |||| ||||| || || || Sbjct 31209 CCGACATAACCATTGGGATCCGTTCCATCCAAACTATATCTATCATTTAAA-AG-TAGAG 31266 Query 119074 ACGCTT--AACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACA 119131 | || || || |||||| | ||| |||||| | || ||||||||||| |||| Sbjct 31267 AAAATTCCAAAGCGTCTTCCGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATACA 31326 Query 119132 TACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATA 119191 |||| ||| | ||||||||||||||||| |||| || ||||| || | |||||| | Sbjct 31327 TACGCAAAAAACCGTGCATTTTACCCTCTCGCATCAATTGCAGTTGAGCTGAGTTCCACA 31386 Query 119192 GAGGATCGTGTGTACGGGCGTGTTCTAA 119219 |||||| |||||||| || || || Sbjct 31387 AGTCATCGTGGGTACGGGCCTGCTCGAA 31414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511399089531400