Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq565 113 4e-20 seq383 87.8 1e-12 seq161 84.2 2e-11 >seq565 Length=193464 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||||||||| || |||||||| || ||| || || | Sbjct 159131 ATGCAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAGCCTTCC 159072 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| |||||| ||||| ||||| | ||| ||||||| Sbjct 159071 GATACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159012 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| ||||||||||||||||| || || ||||||||||| Sbjct 159011 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 158952 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| ||||| || || | || |||| |||| Sbjct 158951 ATTCAGAAGGAGTCAACCTTGCATTTGGTTCTACG 158917 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||||||||| ||||| ||||| ||| ||| || || | Sbjct 159359 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 159300 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| |||||| ||||| ||||| | ||| ||||||| Sbjct 159299 GACACAATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159240 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| ||||||||||||||||| || || ||||||||||| Sbjct 159239 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 159180 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| ||||| || || | || |||| |||| Sbjct 159179 ATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACG 159145 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 ||||||||| | || || |||||| | || ||| ||||| | | || || || Sbjct 145913 AAGCAAAAA-TCCAAGACAAGGAAGGTATTCCTCCAGACCAACAGCGTTTAATTTTCGCT 145855 Query 25173 GGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 |||||||||||||||||| | || || | |||||||| || ||||||||||||||| Sbjct 145854 GGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCTACT 145795 Query 25233 CTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||| |||| | || | || ||||| Sbjct 145794 CTTCACTTGGTACTGCGTCTCCGCGGAGG 145766 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 25108 ATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 25167 || ||||| |||||| ||||| ||||| | ||| |||||||||| | | |||| Sbjct 156632 ATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTTTGATCT 156573 Query 25168 TTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAAT 25227 |||| ||||||||||||||||| ||| | | |||||||||||||| ||||| | Sbjct 156572 TTGCTGGCAAACAATTGGAAGACGGACGCACTTTATCTGATTACAATATTCAGAAGGAGT 156513 Query 25228 CTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | || | || |||| |||| || || || || Sbjct 156512 CGACATTGCATTTGGTCCTACGTTTGCGCGGTGG 156479 >seq383 Length=330124 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | ||||| ||||| || |||||||| || ||| |||||| | Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 25095 GAGACGGTGGCCGATC--TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 25152 || || | | || | | ||||||||| || || |||||||| | || ||||| Sbjct 43784 GATACTATTGA-GAACGTTAAAGCAAAAA-TTCAAGACAAAGAAGGCATTCCTCCAGATC 43841 Query 25153 AACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACA 25212 |||| | | || ||||| || || || |||||||| | || || | || || | Sbjct 43842 AACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATA 43901 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||| |||||||||||||| || || |||||||||| | || ||||| Sbjct 43902 ATATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGG 43950 >seq161 Length=579164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 ||||||||||||| || | ||||| | || |||||||| ||||| ||| || | Sbjct 362455 TAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGC 362396 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 | | || || | | || ||||| |||||| ||||||||||| | || || Sbjct 362395 CTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAG 362336 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209 |||||||| | | || || || || ||||||||||||||| ||| | | |||| Sbjct 362335 ATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATT 362276 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 | || || |||||||| || || | ||| |||| Sbjct 362275 ATAACATACAAAAGGAGTCGACCTTGCACTTGGT 362242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410784809226530