Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq357 145 8e-30 seq451 109 6e-19 seq565 107 2e-18 seq383 89.7 5e-13 seq161 86.0 6e-12 >seq357 Length=326794 Score = 145 bits (160), Expect = 8e-30 Identities = 378/571 (66%), Gaps = 4/571 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACA-CGAGCGAC 116713 |||| || || || || ||||| | || || || ||||| || || || | ||| ||| Sbjct 32759 AGGCGGAAGCATCTTTTTGGACTGCAGAAGAAGTTGACCTCTCTAAAGATATCGA-CGAT 32701 Query 116714 TGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 ||| | || || | | ||| || ||||| || ||||| |||| ||||| || Sbjct 32700 TGGAATCGGTTAAGTAATGGCGAACGTCATTTTATTTCACACGTTTTGGCTTTTTTTGCG 32641 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || ||| || || || || |||||| | || || || || | || ||||| || | Sbjct 32640 GCATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATA 32581 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 |||| || || ||||| || || ||||| || |||||||| || || |||||||||||| Sbjct 32580 ACCGAAGCACGTTGCTTTTATGGGTTTCAAATTGCCATGGAAAATGTACACTCGGAAATG 32521 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAAC 116953 ||| || ||||| || || | | | | | || ||| | | || || Sbjct 32520 TATAGTTTACTTATCGAAACATATATCAGAGATGAGAAAGAAAAGGAATATCTATTTAAT 32461 Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC- 117012 ||||| ||||| ||||| | || || ||||||| || ||||| || ||||| | Sbjct 32460 GCCATTGAGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCACTAGCTTGGATATCA 32401 Query 117013 CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 ||| ||| ||||| || || | | || ||||| |||||||| || | || Sbjct 32400 TCGCA-TTCGGCTAATTTCGGTGAACGTGTTATAGCTTTCGCTGCCGTCGAAGGTATATT 32342 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 |||| || || ||||| | ||||||||||| |||||||| || | ||||| || | Sbjct 32341 CTTTAGTGGGAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTT 32282 Query 117133 GACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTT 117192 || ||| || || | || || | || || || |||| || || ||||| || Sbjct 32281 AACGTTCTCTAATGAAATGATATCACGCGATGAAGGCTTGCACTGTGAATTTGCGGTATT 32222 Query 117193 GCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 |||| || |||||| | || ||||||| Sbjct 32221 AATGTTTAAACATTTGATACAAAAACCGAGC 32191 >seq451 Length=246926 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || |||||||| || |||||||| |||||||| | || |||||| || Sbjct 37998 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 37939 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | || | || |||| ||||||||||| || || | ||| Sbjct 37938 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 37879 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||||||| | || | ||| || || || |||| || | ||||| | ||| || Sbjct 37878 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 37819 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || || |||| | ||||| |||||||| ||| | || || Sbjct 37818 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG 37769 >seq565 Length=193464 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || ||||||||||| | || ||||| | || Sbjct 159131 ATGCAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAGCCTTCC 159072 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| ||||||| || || || || |||||| | || || Sbjct 159071 GATACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159012 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || |||||||| |||| |||| |||||| | ||| ||||| Sbjct 159011 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 158952 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 || ||||||||| | || ||||| Sbjct 158951 ATTCAGAAGGAGTCAACCTTGCAT 158928 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| ||||||||||| | || |||||||| ||||| | || || ||| | Sbjct 159591 AAAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACC 159532 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | ||| | || | || |||| ||||| || || || || | || Sbjct 159531 GTCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGA 159472 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||||||| | || | || ||||| || ||||| |||| |||||| | ||| || Sbjct 159471 CCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTA 159412 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCAT 40893 || || ||||||||| | || ||||| Sbjct 159411 TAATATTCAGAAGGAGTCAACCTTGCAT 159384 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||| || ||||| | || || ||||||||||| | || || ||| | | Sbjct 150635 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCATC 150576 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | ||||| | || | |||||| | ||||| || || || || | |||| Sbjct 150575 GGATACTATCGAAAACG-TTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACC 150517 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || | || | ||| ||||||||| |||| || | ||||| | || |||| Sbjct 150516 AACAGCGTTTAATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACA 150457 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGC 40903 |||| || ||||| |||| ||||| |||| |||| Sbjct 150456 ACATACAAAAGGAATCCACATTGCATTTAGTATTGC 150421 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || ||||| | || || ||||||||||| | || || ||| | | Sbjct 150862 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAATCGTCG 150803 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | || | |||||| | ||||| || || || || | ||||| Sbjct 150802 GATACTATCGAAAACG-TTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 150744 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | |||| || || |||||| |||| |||| ||||| | || ||||| Sbjct 150743 ACAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAA 150684 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||| || |||| ||||| | || ||||| Sbjct 150683 CATACAGAAAGAATCCACATTGCATTTGGTATTGCG 150648 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || | || || ||||| |||||| | || || || ||| Sbjct 151093 AAAATGCAGATCTTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGA-GCC 151035 Query 40747 A-CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | | | || ||||||| || |||||||| |||| | || Sbjct 151034 ATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCAGA 150975 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| | |||| || ||||||||| |||| | | ||||| ||| ||||| Sbjct 150974 TCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGACTA 150915 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| ||||| || | || || ||| | || || || ||| | || ||| Sbjct 150914 CAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGC 150863 >seq383 Length=330124 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| | || || ||||||||||| | || || ||| || | Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | || |||| | || | |||||||| |||||||| ||||| || | || || Sbjct 43784 GATACTATTGAGAACG-TTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCA 43842 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | || | || || || |||||||| || | |||||| | ||||| || Sbjct 43843 ACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAA 43902 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||| | ||||| ||| | ||||| || Sbjct 43903 TATCCAAAAGGAATCTACGCTCCATTTGGTGTTACG 43938 >seq161 Length=579164 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| || || ||||| || || |||||||| || || | || || || | Sbjct 362454 AAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCC 362395 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | ||| |||||| ||||||| || ||||| ||||| || | || Sbjct 362394 TTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGA 362335 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| | || | ||| || ||||| |||| || | ||| || | || || Sbjct 362334 TCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATTA 362275 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||||| | || |||| Sbjct 362274 TAACATACAAAAGGAGTCGACCTTGCA 362248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515203775625200