Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq47 143 2e-29 seq1001 82.4 5e-11 >seq47 Length=1194842 Score = 143 bits (158), Expect = 2e-29 Identities = 272/397 (69%), Gaps = 4/397 (1%) Strand=Plus/Minus Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 |||||||| | ||| || |||||| ||||| || || || | | || | |||| Sbjct 1117537 TAAATGTGCGTATCACCGGTAGTGTGTATAAACTCGCCTGGTTTAAGGCCGGTTAAATGG 1117478 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 || |||||||| ||||||| | ||| || || ||||| || || || || |||||| Sbjct 1117477 GCAATCATACACGTTAATAATGCATACGATGCTATATTAAATGGGACACCCAGCCCCATA 1117418 Query 97186 TCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTC 97245 || || | ||||| | ||||| || | || || | ||||| || || | Sbjct 1117417 TCGGCACTGCGCTGATAAAGTTGACATGACAACTCATTATTGGATACATAGAATTGGGCC 1117358 Query 97246 AATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATC 97305 || ||| ||||| || || ||||||||||| | ||||| |||||||| ||| Sbjct 1117357 AAGCAATGGCAGGGCGGTAAGGCCATTTTTGGTATATCTACTGGATTCCAAGAGGACAAA 1117298 Query 97306 AACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCA 97365 | ||| | || ||| || || ||||| ||| || |||||||||| || |||||||| Sbjct 1117297 ATCATACGTCGATCTGTGGGATTTGTAGTTATTGTCCTAATTATCTGTTTCAATTGATCG 1117238 Query 97366 ACGCCTTCTCCACCATAATTGT-GC-TTAAGACCTTGATATTCTGCTCCAAAATGCCTCC 97423 || || || |||||| | | || ||| | |||||| ||| |||||||| | || Sbjct 1117237 ACTCCCTCCGTACCATAGCTATCGCGACAAGTGC--GATATTGTGCCCCAAAATGGCGCC 1117180 Query 97424 ATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTC 97460 |||| || || |||| || || | ||| |||||||| Sbjct 1117179 ATTGAAAACCGTAAATTGGCCCCAAGTCACCTTCTTC 1117143 >seq1001 Length=38010 Score = 82.4 bits (90), Expect = 5e-11 Identities = 131/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 97138 GTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTT 97197 ||||||| || ||| ||||||| |||||||| | || || ||||| ||||||| Sbjct 6668 GTTAATAAAGCATAACTAGCAAGATTAAAAGGTAATCCAAGAAAAATATCGCATGATCTT 6727 Query 97198 TGATATAACTGACAGGA-AAGCTTTCCATCACACACATAAAACTGACTCAATACATGACA 97256 ||||||| ||||| || ||| ||| | ||| |||||||| ||| |||| |||||| Sbjct 6728 TGATATACTTGACATGATAAGGTTTGATTTACA-ACATAAAATTGAAATAATATATGACA 6786 Query 97257 GGGGGGCAACGCCAT---TTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCT 97313 || || | | ||| |||| | ||| |||||||| ||| | || || ||||| Sbjct 6787 CGGAGGAAGAGACATGAATTTT---AAATCCCCAACATTCCAGGCAGAAATTAATATTCT 6843 Query 97314 TCTA 97317 |||| Sbjct 6844 TCTA 6847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346773877700150