Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq565 147 3e-30 seq383 141 1e-28 seq451 140 5e-28 seq161 132 7e-26 seq17 100 4e-16 seq1001 98.7 2e-15 >seq565 Length=193464 Score = 147 bits (162), Expect = 3e-30 Identities = 202/276 (73%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 || |||||| || || | |||||| | || || |||||||| || | ||| |||| | Sbjct 151094 TAAAATGCAGATCTTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAGCC 151035 Query 124595 AAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 | ||||| ||| ||| ||||||| ||||||||||||||||| ||| | ||||| | Sbjct 151034 ATCCGATACTATTGAGAATGTTAAAACT-AAAATTCAAGATAAAGAGGGTGTCCCACCAG 150976 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 |||||||| | | || ||||| || ||||| || || || | || ||| | || | Sbjct 150975 ATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGACT 150916 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAA 124772 | || ||||| |||||||| || | ||||||||||||||||| || ||||| || ||| Sbjct 150915 ACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGCATGCAAA 150856 Query 124773 AATTCATAAAAA--TTGATTGTAAATAAATATCACT 124806 ||| | |||| |||| || ||| || |||||| Sbjct 150855 TATTTGTTAAAACTTTGACTGGAAA-AACCATCACT 150821 Score = 134 bits (148), Expect = 2e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || |||| ||| |||| ||||||||||| ||| | || ||||| | Sbjct 159588 AATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCGTC 159529 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | ||| || |||||||| || |||||||| || || || || Sbjct 159528 AGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 159469 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | |||||||| || || ||| | || || | || || || |||||||| Sbjct 159468 GCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTATAA 159409 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| || || ||||| ||||||||||| ||||| | || ||||| || ||| || Sbjct 159408 TATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGGCATGCAAATTT 159350 Score = 127 bits (140), Expect = 3e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| | || || ||||| || ||| |||| | || | Sbjct 159131 ATGCAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAGCCTTCC 159072 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || |||||||||||||| ||||| || || || |||||| Sbjct 159071 GATACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159012 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || |||||||| || || | || || || ||||| ||| Sbjct 159011 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 158952 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || || ||||| |||||||||||| ||||| | || ||||| || ||| || Sbjct 158951 ATTCAGAAGGAGTCAACCTTGCATTTGGTTCTACGTCTGCGCGGTGGCATGCAAATTT 158894 Score = 123 bits (136), Expect = 4e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||||||||| ||||| || || || ||||||||| | | || ||||| || ||| Sbjct 156621 AAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTTTGATCTTTGCTGGCAAA 156562 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || || | || || ||| ||||| |||||||| || || || || |||||| Sbjct 156561 CAATTGGAAGACGGACGCACTTTATCTGATTACAATATTCAGAAGGAGTCGACATTGCAT 156502 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAA 124773 ||||| ||||||| || ||||||||| ||| Sbjct 156501 TTGGTCCTACGTTTGCGCGGTGGTATTTAAA 156471 Score = 114 bits (126), Expect = 2e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| | || ||||| || || || |||| | || | Sbjct 159359 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 159300 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | || |||||||||||||| ||||| || || || |||||| Sbjct 159299 GACACAATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159240 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || |||||||| || || | || || || ||||| ||| Sbjct 159239 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 159180 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || || ||||| ||||||||||| ||||| | || ||||| || ||| || Sbjct 159179 ATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGGCATGCAAATTT 159122 Score = 113 bits (124), Expect = 7e-20 Identities = 192/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || | || || ||||| || ||| | || | ||| | Sbjct 150862 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAATCGTCG 150803 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || || ||||| || ||||| ||||| || |||||||| || || || || Sbjct 150802 GATACTATCGAAAACGTTAAAGCA-AAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 150744 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || ||||| |||||||| || || || | || || || ||||| || Sbjct 150743 ACAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAA 150684 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 || || |||||||| || ||||||||||| || ||| | || ||||| || ||| ||| Sbjct 150683 CATACAGAAAGAATCCACATTGCATTTGGTATTGCGTCTCCGCGGTGGAATGCAAATATT 150624 Query 124777 CATAAAAA--TTGATTGTAAATAAATATCACT 124806 | |||| |||| || ||| || |||||| Sbjct 150623 TGTTAAAACTTTGACTGGAAA-AACCATCACT 150593 Score = 104 bits (114), Expect = 4e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | || || | || || ||||| || ||| | || | ||| || Sbjct 150635 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCATC 150576 Query 124598 TGATACAATTTCTAA-TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || || ||||| || ||||| ||||| || |||||||| || || || | Sbjct 150575 GGATACTATCGAAAACGTTAAAGCA-AAAATCCAAGACAAGGAAGGTATTCCTCCAGACC 150517 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| | | ||||| || || ||||| || || ||| | || ||||| ||||| | Sbjct 150516 AACAGCGTTTAATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACA 150457 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 | || ||||| ||||| || |||||||| || || Sbjct 150456 ACATACAAAAGGAATCCACATTGCATTTAGTATT 150423 >seq383 Length=330124 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | |||||| | || ||||||||||| ||| ||||| |||| | Sbjct 43495 AATGCAGATCTTCGTGAAGACATTGACTGGCAAAACTATCACTTTAGAGGTTGAGCCGTC 43554 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| |||||||||||||| ||||| || || || ||||| Sbjct 43555 TGACACTATTGAGAATGTTAAAGCTAAAATTCAAGATAAGGAAGGAATCCCGCCAGATCA 43614 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | |||||||| ||||| ||||| |||||| | || || | |||||||| Sbjct 43615 GCAGCGTTTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTTCGGATTATAA 43674 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| |||||||||||||| || | ||||| || || || || Sbjct 43675 CATACAGAAAGAGTCAACTTTGCATTTAGTCCTGCGTTTGCGTGGGGGCAT 43725 Score = 122 bits (134), Expect = 1e-22 Identities = 176/245 (72%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || | ||||| ||||| || ||| |||| | ||| | Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || ||||| || ||||||||||| |||||||| || || || ||||| Sbjct 43784 GATACTATTGAGAACGTTAAAGCA-AAAATTCAAGACAAAGAAGGCATTCCTCCAGATCA 43842 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | |||||||| || || || | || ||| | || || || ||| ||||| Sbjct 43843 ACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAA 43902 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA---TTAAAAA 124774 ||| ||||| ||||| || | |||||||| |||||| | || || || | | |||| Sbjct 43903 TATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGGCAGATTCTAAAA 43962 Query 124775 TTCAT 124779 ||||| Sbjct 43963 TTCAT 43967 >seq451 Length=246926 Score = 140 bits (154), Expect = 5e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || ||||| ||||| || || ||| | ||| | ||| | Sbjct 37995 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 37936 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||| || ||||| || ||||| || || ||||| || || Sbjct 37935 GACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAG 37876 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || ||||| ||||| || ||| |||| ||||| ||||||||| Sbjct 37875 CAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTATAAT 37816 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||||||||| || || ||| | || || ||||| |||||||| Sbjct 37815 ATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG 37769 >seq161 Length=579164 Score = 132 bits (146), Expect = 7e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || ||||||||||| ||| | || |||| | Sbjct 362451 AATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTC 362392 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || |||||||| ||||||||||| || || || ||||| Sbjct 362391 CGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCA 362332 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | ||||| || || |||||||| || ||| | || || ||| |||||||| Sbjct 362331 ACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATTATAA 362272 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || ||||| ||||| | ||| | || |||||||| Sbjct 362271 CATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGGTAT 362221 >seq17 Length=1967559 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || |||| ||||| || | ||| |||| | ||| | | Sbjct 594869 AATGCAGATTTTTGTGAAAACGTTAACGGGCAATACCCTTACTTTAGATGTCGAACCGAC 594928 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || | ||| || ||||| ||||| || ||||| ||||| |||| Sbjct 594929 CGATACTATTGAAAAGATTAAAAGCAAGATTCAGGATAAGGACGGTATTCCACCAAATCA 594988 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | |||| ||| || || || ||||| |||||| | || || | ||||| Sbjct 594989 ACGCCGATTGATTTATGCCGGCAAGCAGTTAGAAGATAGTTGCACGCTAACGAACTATAA 595048 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 || ||||| | | ||| | ||||||||||||||||||| || |||| Sbjct 595049 CATACAAAAGGGCGCGACTCTCCATTTGGTTTTACGTTTACTTGGCGGTA 595098 >seq1001 Length=38010 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/228 (71%), Gaps = 7/228 (3%) Strand=Plus/Plus Query 205450 TGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCC 205509 ||||||| ||||| || |||||| ||||||||||| |||||| |||| || | | Sbjct 6653 TGTGCAAACATATGCGTTAATAAAGCATAACTAGCAAGATTAAAAGGTAATCCAAGAAAA 6712 Query 205510 ATATCAGCTGATCTTTGATACATTTGACATG-TAAGATATTTATTATTAATTACATGAAA 205568 ||||| |||||||||||| | |||||||| |||| | | ||| | |||| ||| Sbjct 6713 ATATCGCATGATCTTTGATATACTTGACATGATAAG----GTTTGATTTACAACATAAAA 6768 Query 205569 TTGTACAAAACAATGACAAGGTGGTATAACCAT-ATTTTCAACATCTATAGGATTCCAGG 205627 ||| | || |||||| || || | | ||| | ||| || ||| | |||||||| Sbjct 6769 TTGAAATAATATATGACACGGAGGAAGAGACATGAATTTTAA-ATCCCCAACATTCCAGG 6827 Query 205628 CTGTTAATATTATATTTCTAGATTCAGGtttattttttattttattta 205675 | | | || ||| |||||||||| || | ||||| | || ||||| Sbjct 6828 CAGAAATTAATATTCTTCTAGATTCCGGAGTGTTTTTCAATTGATTTA 6875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755433383536000