Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq451 125 6e-24 seq565 123 2e-23 seq383 118 9e-22 >seq451 Length=246926 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || || | |||||| | || | ||| || ||||||||||| || |||||| | Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||| || | || ||||||||| | || | || ||||| ||||| || Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||| ||||| ||| || ||| || | ||||| ||||||| | |||||| Sbjct 37889 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 37948 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || ||||| || || |||||||||||||||||||| Sbjct 37949 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 37995 >seq565 Length=193464 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | ||| ||||| || | ||| || ||||| || ||||||||||| | Sbjct 150636 CCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGAC 150695 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| || || | |||||||||||| |||| | |||||| || || ||||| Sbjct 150696 AACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGA 150755 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || ||||||||| |||||| |||||| | ||||| || |||| || || Sbjct 150756 ATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACT 150815 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | ||||| || |||| |||||| ||||| || |||||| Sbjct 150816 TCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATG 150863 Score = 118 bits (130), Expect = 9e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || || || | ||| || || ||||| ||||||||||| || ||||| ||| Sbjct 150422 CAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATC 150481 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | |||||| |||||| | || | |||||| || || ||||| || || |||||||| Sbjct 150482 TTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTC 150541 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 | |||||| |||||| | ||||| || |||| || | || || || | || | | Sbjct 150542 TTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGT-TCTACTTCCAAAGTGATGG 150600 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || |||| |||||| ||||| || ||||| Sbjct 150601 TTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||||||||| | | || |||||||| | ||||| || ||||| ||||||||||| Sbjct 145765 ACCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGA 145824 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| ||| || | ||||| |||||| | || | |||||| || || ||||| Sbjct 145825 CAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGG 145884 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG 118680 || || ||||||||| |||||| |||||| | ||||| || |||| Sbjct 145885 AATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCG 145934 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || ||||| |||| ||| || ||||| ||||||||||| || | ||||| || Sbjct 150879 AAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCATTT 150938 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | |||||| ||||| |||| | ||| || ||||| || || | ||||| || ||| Sbjct 150939 TCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTTATCT 150998 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 |||||| |||||| | || | || || | ||| ||||| | ||| | ||| Sbjct 150999 TGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTT 151058 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| || || || || |||||||| Sbjct 151059 TTTCCAGTCAATGTCTTCACGAAGATCTGCAT 151090 >seq383 Length=330124 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | |||||||| |||| ||||| || ||||| || || || || | Sbjct 43950 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 43891 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||| || ||||| || || || | || | ||||| ||||| ||||| Sbjct 43890 AAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGA 43831 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| || |||||| ||||||| |||||| | || | || |||| | || || Sbjct 43830 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACT 43771 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | ||||| || |||| |||||||||||| ||||||||| Sbjct 43770 TCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 43723 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || ||||| ||||| | ||| || |||||| | || |||||| Sbjct 43692 GTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCCTCCAATTGCTTTCCA 43633 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | |||||||||||| || || || || ||||| ||| |||||| |||| Sbjct 43632 GCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGAATTTTAGCTTTA 43573 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | ||| ||||| | || | |||||||| |||| || Sbjct 43572 ACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTTTTGCCAGTCAATGTC 43513 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 43512 TTCACGAAGATCTGCAT 43496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433817736897340