Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq451 118 1e-21 seq565 102 9e-17 seq700 93.3 5e-14 seq205 93.3 5e-14 seq869 91.5 2e-13 seq538 91.5 2e-13 seq438 91.5 2e-13 seq391 91.5 2e-13 seq193 91.5 2e-13 seq15 91.5 2e-13 seq11 91.5 2e-13 seq383 89.7 6e-13 seq161 84.2 3e-11 >seq451 Length=246926 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| |||| ||||||||||| | ||| |||||| || ||||||||||| ||||| | Sbjct 37768 TCCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGA 37827 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || | ||||| |||||||| || | ||| |||||||||| || Sbjct 37828 CAATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGG 37887 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||| |||||| ||| | || | ||| | | | | ||||| | ||| | Sbjct 37888 AATTCCCTCTTTGTCC-TGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGA 37946 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 | || | |||||||| ||||||||||| || |||||||| || ||||| || Sbjct 37947 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 37998 >seq565 Length=193464 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| ||||||||||||||| || || || || |||||||||| || || || | Sbjct 150647 ACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCC 150706 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | ||| || ||||| || || | ||||| ||||| | || | | ||||| Sbjct 150707 GTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTT 150766 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||||||| ||| | | | | || || |||||| || || | ||||| Sbjct 150767 GTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGAT 150826 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || || | || || ||||| |||||||| Sbjct 150827 GGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42970 GCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGT 43029 |||| || |||||||||||| |||||||| || |||||||||| || || || | | Sbjct 150421 GCAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCAT 150480 Query 43030 CATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGT 43089 | || | ||| || |||||||| || | ||||| ||||| | || | | ||||||| Sbjct 150481 CTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150540 Query 43090 CCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||||||| ||| | | | | || || | ||| || || | ||||||| Sbjct 150541 CTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGG 150600 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| || || | || || ||||| ||||||||| Sbjct 150601 TTTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 150635 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||||||||| || |||||| |||||||| ||||| | || || || |||| || Sbjct 159379 ACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCTTCC 159438 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| || || || || | || |||||||| | || | | ||||||| | || Sbjct 159439 AGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGT-CTTG 159497 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | ||| | | | | || || || ||| || || | ||||| ||||| Sbjct 159498 AATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTT 159557 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 ||| |||| || ||||| ||||||||||||||| Sbjct 159558 GCCAGTTAATGTTTTTACGAAGATTTGCATTTTT 159591 >seq700 Length=133323 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 28244 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 28303 Query 60126 TACTACCGAGGATT 60139 ||||| |||||||| Sbjct 28304 TACTATCGAGGATT 28317 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 23656 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 23715 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 23716 TACTATCGAGGAT 23728 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 24107 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 24166 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 24167 TACTATCGAGGA 24178 >seq205 Length=499504 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 192767 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 192826 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 192827 ATACTATCGAGGACTG 192842 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 132679 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 132738 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 132739 TACTATCGAGGACTG 132753 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 133255 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 133314 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 133315 ATACTATCGAGGA 133327 >seq869 Length=75817 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 59442 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 59383 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 59382 TACTATCGAGGAT 59370 >seq538 Length=218903 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 6596 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 6655 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 6656 TACTATCGAGGAT 6668 >seq438 Length=253823 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 164523 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 164464 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 164463 TACTATCGAGGAT 164451 >seq391 Length=285329 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 225483 TTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 225424 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 225423 CTATACTATCGAGGA 225409 >seq193 Length=530083 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 525291 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 525350 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 525351 TACTATCGAGGAT 525363 >seq15 Length=1977833 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 966110 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 966169 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 966170 TACTATCGAGGAT 966182 >seq11 Length=2119815 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 13515 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 13574 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 13575 TACTATCGAGGAT 13587 >seq383 Length=330124 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| ||||||||||| | || |||||||| ||||| || || | | Sbjct 43950 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 43891 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || ||||||||||| || || || | ||||| || || | || Sbjct 43890 AAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGA 43831 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCAC 43135 | || || ||||| ||| |||||| || | ||| | | | || || | ||| || Sbjct 43830 ATGCCTTCTTTGTCT-TGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTAC 43772 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || | || ||||||||||| ||||| Sbjct 43771 TTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 >seq161 Length=579164 Score = 84.2 bits (92), Expect = 3e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| ||||| || ||||||||| || || ||||| | | ||||||| | || || Sbjct 362242 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 362301 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | || ||||||||||| || | || || || || | || | || || || ||| || Sbjct 362302 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCC-TG 362360 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | |||| | |||| | | | |||||| | || || || | || || ||||| Sbjct 362361 AATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTT 362420 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTA 43188 ||| || || || || ||||| ||||||||||||| Sbjct 362421 GCCAGTAAGAGTTTTAACAAAAATTTGCATTTTTA 362455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571800481210600