Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq565 109 4e-19 seq383 82.4 5e-11 >seq565 Length=193464 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | || |||| || || || |||||||||||||||||| || || Sbjct 150635 TCCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGA 150694 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | ||| |||| |||||||| || || || || || | ||||| ||||| || Sbjct 150695 CAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGG 150754 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| || ||||||||| | | | || | ||| | |||||| | Sbjct 150755 AATACCTTCCTTGTCTTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTA 150813 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||||||||||| || || | |||||| ||||| || ||||| Sbjct 150814 CTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| || ||||||||||| || |||| ||| | || |||||||| ||||| ||||| Sbjct 150443 TTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCGAA 150502 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 ||| | ||||| ||||| || | | |||||||| || ||||||||| | | Sbjct 150503 AATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT-TTTTGCTTTAACGT 150561 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | ||| || |||| ||||||||||| || || | |||||| | Sbjct 150562 TTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAA 150621 Query 34377 CAAAGATCTGCAT 34389 |||| || ||||| Sbjct 150622 CAAATATTTGCAT 150634 >seq383 Length=330124 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | | ||||| || | ||| ||| || || || || ||||| ||| Sbjct 43950 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 43891 Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | | || ||| | || |||| |||||| || || ||||| | ||||| || || || Sbjct 43890 AAGGTG-CGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGG 43832 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTA--GATCGGCTATCGAATCGGTCGATTCG 34339 | || || ||||| || |||||||||| | || | || | ||| | | ||| Sbjct 43831 AATGCCTTCTTTGTCTTGAAT-TTTTGCTTTAACGTTCT-CAATAGTATCCGAGGGTTCT 43774 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||||||||||| || || | |||||| |||||||||||||| Sbjct 43773 ACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323062569831200