Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq357 250 2e-61 >seq357 Length=326794 Score = 250 bits (276), Expect = 2e-61 Identities = 494/722 (68%), Gaps = 12/722 (2%) Strand=Plus/Plus Query 16054 TTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCAT 16113 ||| || || || | ||| || ||| |||||||||| | ||| || | |||||| Sbjct 32044 TTCTAATAACAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCAT 32103 Query 16114 TCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTC 16173 || ||||| | || || | || ||||| ||||| | |||||| || ||||| || || Sbjct 32104 GCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATC 32163 Query 16174 AATGATTATATCTCTTACTACACTATTTAA-CGGAGGGTTTAATAAGTGTTTAAACATTA 16232 | ||||| || | | | | | ||| ||| | || || ||||||||||||| Sbjct 32164 TGTTATTATTTC-CAAAATCCGTTCTTTGCTCGGTTTTTGTATCAAATGTTTAAACATTA 32222 Query 16233 -TACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTA 16291 ||| ||||| ||||| ||||| ||||| || | ||| | || || || || || Sbjct 32223 ATACC-GCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAACGTT 32281 Query 16292 AGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAG 16351 | ||||||||||| ||| ||||| || | ||||||||| | || || ||| |||| Sbjct 32282 AAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTCCCACTAAAG 32341 Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT--CTAtttttac 16409 ||||||||||| || || || || || | | || |||||| | | | | | | Sbjct 32342 AATATACCTTCGACGGCAGCGAAAGCTATAACACGTTCACCGAAATTAGCCGAATGCGA- 32400 Query 16410 tttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTG 16469 | |||||| | ||||| | || || | ||||| | ||| |||| || | Sbjct 32401 -TGATATCCAAGCTAGTGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATGG 32459 Query 16470 CATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTAT 16529 ||||||||| ||| | |||||||| |||| ||||| || || || |||||||||| Sbjct 32460 CATTAAATAGATATTCCTTTTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAACTAT 32519 Query 16530 ACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGG 16589 ||||||| || || | ||| ||||| || || ||||| ||||||||||| | ||||||| Sbjct 32520 ACATTTCCGAGTGTACATTTTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTCGG 32579 Query 16590 ATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAG 16649 |||||| || || | |||| | ||| |||| || || ||||| || |||||| | Sbjct 32580 TTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATG 32639 Query 16650 CTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTAT--CTGAAAGTTTTAA 16707 | |||||||| || | | |||| |||||||| |||| || || || || Sbjct 32640 CCGCAAAAAAAGCCAAAACGTGTGAAATAAAATGACGTTCGCCATTACTTAACCGATT-- 32697 Query 16708 CCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGC 16767 ||| || | |||||| || | || || |||||| ||||||||||||| || | || Sbjct 32698 CCAATCGTCGATATCTTTAGAGAGGTCAACTTCTTCTGCAGTCCAAAAAGATGCTTCCGC 32757 Query 16768 CT 16769 || Sbjct 32758 CT 32759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462498153547000