Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq565 91.5 1e-13 seq161 82.4 6e-11 >seq565 Length=193464 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 |||||||| |||| ||| || ||||| |||||||| || || ||| |||| Sbjct 150651 AATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCT 150710 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| |||||||| || || ||||| ||||||||||| ||||| | ||| |||||||| Sbjct 150711 TCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCT 150770 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| ||||| | | | ||| || || |||| || || || Sbjct 150771 TGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGGTT 150830 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||| ||| || ||||| ||||||||| Sbjct 150831 TTTCCAGTCAAAGTTTTAACAAATATTTGCATG 150863 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | || ||||| |||| || |||||||||||| ||||| ||| Sbjct 159132 GCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGA 159191 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| |||| |||| |||||| || || || ||||| || ||||| || || || Sbjct 159192 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGG 159251 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||| || |||||| ||| || | | | |||| | ||| || Sbjct 159252 GATTCCTTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGAC 159311 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | ||| || |||||||| |||| || || || || ||||||||| Sbjct 159312 TTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCATG 159360 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/132 (74%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || || ||||| || |||||||| || || | ||| | || || Sbjct 145783 TACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTC 145842 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || |||||| || ||||| || || ||||||||||| ||||| | ||| |||||||| Sbjct 145843 CAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTG 145902 Query 45247 AATTTTTTGCTT 45258 | ||||||||| Sbjct 145903 GA-TTTTTGCTT 145913 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | || ||||| |||| || |||||||||||| || || ||| Sbjct 159360 GCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGA 159419 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| |||| |||||||| || ||||| || ||||| || || ||||| ||||| Sbjct 159420 CAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGG 159479 Query 45229 CACACCCTCCTTGTC 45243 | ||| |||||||| Sbjct 159480 AATACCTTCCTTGTC 159494 >seq161 Length=579164 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGT-CGTTCAGTTGGCGATCGTCGT 45185 ||||||||||| || |||||| || ||||| || | || | | | || | || | Sbjct 362241 TACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGT-CCGCCCATCTT 362299 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 ||| |||||| || ||||| ||||| || ||||| || ||||| | || || || ||| Sbjct 362300 CCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCT 362359 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 |||||| ||| || | | |||| | ||| || |||| ||||| || | Sbjct 362360 GAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTT 362419 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||| || ||||| || ||||| |||||||| || Sbjct 362420 TGCCAGTAAGAGTTTTAACAAAAATTTGCATTTT 362453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395063668125295