Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq357 279 5e-70 >seq357 Length=326794 Score = 279 bits (308), Expect = 5e-70 Identities = 506/734 (69%), Gaps = 6/734 (1%) Strand=Plus/Plus Query 13996 TGACATAAAC--ACTTTATCACAAC-CTAGTTCTAATAGTAATCTATCCGCAATGAACTC 14052 ||| |||||| || || || || | |||||||||||| || | ||| |||| | || Sbjct 32015 TGAAATAAACTTACCTT-TCCCACCTCTAGTTCTAATAACAAACGATCGGCAACATATTC 32073 Query 14053 AATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGT 14112 ||||||| | |||| || | ||||| || |||| | || || | | || Sbjct 32074 TATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGT 32133 Query 14113 TAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGA 14172 ||||| |||||||| || || || || |||| || | ||| ||| || Sbjct 32134 CAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTCCAAAATCCGTTCTTTGCT 32193 Query 14173 AGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATC 14232 || | | | | ||||||||| ||||| |||||| ||||| || | ||| ||||| Sbjct 32194 CGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCACAGTGCAAGCCTTCATC 32253 Query 14233 TCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCA 14292 | || | ||| || || || ||||| |||||||| | ||| ||||| |||| ||| Sbjct 32254 GCGTGATATCATTTCATTAGAGAACGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCA 32313 Query 14293 AAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAA 14352 |||||| | |||||| || ||||||||| || || || ||||| || ||||| | Sbjct 32314 AAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGACGGCAGCGAAAGCTATAAC 32373 Query 14353 TCGTTCTCC-AAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttt 14411 ||||| || ||| | | | | | |||||||| | |||||||| | || | Sbjct 32374 ACGTTCACCGAAATTAGCCGAATGCGAT-GATATCCAAGCTAGTGCCCATTCCGCCTTCT 32432 Query 14412 ttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTG 14471 | |||| || |||||| ||||| |||||||||| || |||||| ||||| | | Sbjct 32433 TCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGATATTCCTTTTCTTTCTCATCTC 32492 Query 14472 AAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCT 14531 || ||||| || |||||||| ||||||||||| ||||||| |||||||| || || | Sbjct 32493 TGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGTACATTTTCCATGGCAATTT 32552 Query 14532 GAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCA 14591 |||| |||||||| || | ||||| | ||| |||||| | |||||| ||| | | Sbjct 32553 GAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTA 32612 Query 14592 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14651 |||| |||||||| |||||||| || |||||||| ||||| | || | |||||| | Sbjct 32613 AATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAAACGTGTGAAATAAAAT 32672 Query 14652 ATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCAT 14711 | || |||| || | ||||||||| | | ||| ||||| || || ||||| | Sbjct 32673 GACGTTCGCCATTACTTAACCGATTCCAATCGTCGATATCTTTAGAGAGGTCAACTTCTT 32732 Query 14712 CAACTGTCCAAAAA 14725 | | ||||||||| Sbjct 32733 CTGCAGTCCAAAAA 32746 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 ||||| |||||||||||||| | ||||||||| |||||||| || ||||| || || | Sbjct 31861 ACGCCAATTTTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTCGTTTTGCCATCAATA 31920 Query 13964 GATATATTTTCCATAAAATCAAATGGATTT 13993 ||| || | ||| || |||||||||||| Sbjct 31921 CTTATTTTATTCATGAATTCAAATGGATTT 31950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482331159778600