Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq565 122 7e-23 seq161 104 2e-17 seq451 82.4 6e-11 >seq565 Length=193464 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||| || || ||||| ||||| |||| || || | ||||||||||||||||| Sbjct 159163 GTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGTTTGCCA 159222 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | | ||||||||| ||| | ||||||||||| ||||| |||| Sbjct 159223 GCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTG 159282 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||| |||||| ||| | ||||||| | ||||| ||||||||| Sbjct 159283 ACGTTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTT 159342 Query 18309 TTTACAAAAATTTGCAT 18325 || || ||||||||||| Sbjct 159343 TTGACGAAAATTTGCAT 159359 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||| || || ||||| ||||| |||| || || | ||||||||||||||||| Sbjct 158935 GTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGTTTGCCA 158994 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | | ||||||||| ||| | ||||||||||| ||||| |||| Sbjct 158995 GCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTG 159054 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| || || |||||| ||| | |||||| |||| || ||||||||| Sbjct 159055 ACATTCTCAATGGTATCGGAAGGCTCGACTTCTAAAGTGATGGTTTTACCAGTCAATGTT 159114 Query 18309 TTTACAAAAATTTGCAT 18325 || || ||||||||||| Sbjct 159115 TTGACGAAAATTTGCAT 159131 Score = 100 bits (110), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || ||||| |||||||| |||||||||||||| | | ||| | || |||| Sbjct 150882 ACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCATTTTCC 150941 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || |||||||| ||| |||| | | ||||||||| || || || || ||||| | Sbjct 150942 AACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTTATCTTGA 151001 Query 18237 ATTT--GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 |||| ||| || || | ||| ||| || ||||| || | |||||| ||| Sbjct 151002 ATTTTAGTT--TTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTT 151059 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 | || |||||||| || || || || |||||||| ||| Sbjct 151060 TTCCAGTCAATGTCTTCACGAAGATCTGCATTTTAAAA 151097 >seq161 Length=579164 Score = 104 bits (114), Expect = 2e-17 Identities = 175/251 (70%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 18095 TTAT-CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| || || || || | ||||||| ||| | || || || ||||| ||||| || | Sbjct 362219 TTATACCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAAT 362278 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 | | | || | ||||||||||||||| || || | || | | ||||||||| Sbjct 362279 CCGATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTG 362338 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273 || | |||||| ||||| ||||| |||||| | | ||| |||||| |||| Sbjct 362339 GAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCT 362398 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 | ||| | || || ||||||| || | ||||| ||||||||||||||||||| | Sbjct 362399 CAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTTATAT 362458 Query 18334 TCTTATAAATG 18344 || || ||||| Sbjct 362459 TC-TAAAAATG 362468 >seq451 Length=246926 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 18128 TGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCC 18187 ||| |||||||||||||| || || |||| || ||| || |||||||||||| || || Sbjct 37798 TGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATCTTCCAATTGCTTTCC 37857 Query 18188 CGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-T 18246 || | || | || ||| || || || | || || || || ||| | | || | Sbjct 37858 AGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCT-TGGCTT 37916 Query 18247 TGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATG 18306 | || | | | | |||||| ||| ||| |||| |||||| | ||||| || | | Sbjct 37917 TTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAGGG 37976 Query 18307 TTTTTACAAAAATTTGCATTTT 18328 ||||||||||||| ||||| || Sbjct 37977 TTTTTACAAAAATCTGCATATT 37998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379332927304275