Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq565 96.9 3e-15 seq383 89.7 4e-13 >seq565 Length=193464 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| |||||||||||||| || || || ||||| || || | || || |||||| Sbjct 150863 CATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAATCGTC 150804 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 || | | | |||| ||||| | |||||| | || ||||| | || ||||| Sbjct 150803 GGATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 150744 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 || ||||| || | ||| || ||||| ||||||| | || || ||||||| Sbjct 150743 ACAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAA 150684 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 |||||||||||| |||| | ||||| || || || | ||||| || Sbjct 150683 CATACAGAAAGAATCCACATTGCATTTGGTATTGCGTCTCCGCGGTGG 150636 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || ||||| ||||| |||||||| || || | || || ||| || Sbjct 159587 ATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCGTCA 159528 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| |||||| | || ||| | || ||||| | || |||||| Sbjct 159527 GATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 159468 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| ||||| ||||||||||| || || |||||| | Sbjct 159467 CAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTATAAT 159408 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||| ||| | || | ||||| || |||| ||||||| || Sbjct 159407 ATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGG 159361 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| |||||||||||||| || || || ||||| || || | || || ||| | Sbjct 150634 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCATCG 150575 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| ||||| | |||||| | || ||||| | || ||||| Sbjct 150574 GATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 150515 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || |||||||| | || |||||||| |||||||| | || || ||||||| | Sbjct 150514 CAGCGTTTAATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAAC 150455 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTT 25043 ||||| || || |||| | |||||||| || Sbjct 150454 ATACAAAAGGAATCCACATTGCATTTAGTATT 150423 >seq383 Length=330124 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || || || || || |||||||| || || | || || || || Sbjct 43496 ATGCAGATCTTCGTGAAGACATTGACTGGCAAAACTATCACTTTAGAGGTTGAGCCGTCT 43555 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | || | |||||| | |||||| | || ||||| | ||| || ||| Sbjct 43556 GACACTATTGAGAATGTTAAAGCTAAAATTCAAGATAAGGAAGGAATCCCGCCAGATCAG 43615 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || |||||||| | ||| || || ||| |||| ||| | ||| | ||||| | | Sbjct 43616 CAGCGTTTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTTCGGATTATAAC 43675 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 |||||||||||| | || | |||||||| | || ||||| || || Sbjct 43676 ATACAGAAAGAGTCAACTTTGCATTTAGTCCTGCGTTTGCGTGGGGG 43722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418291790098400