Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq47 143 5e-29 >seq47 Length=1194842 Score = 143 bits (158), Expect = 5e-29 Identities = 426/649 (66%), Gaps = 15/649 (2%) Strand=Plus/Plus Query 35175 TATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCA 35234 |||| || ||||| |||||||| ||||| | | |||| || ||||| ||| | | Sbjct 1116931 TATCTATATTTGGTGCCCAAATGCGGTTCAATTTGCGAG----CATCATTCCCGTTATTA 1116986 Query 35235 -CTACCAAGAAAATTTTCTGGAGAGGAGTTGTG-GAAGAACTCTCGTGGTTCATCAGGGG 35292 | || |||||| | |||||| | | || ||| |||||||| ||||| || || || Sbjct 1116987 ACAACAAAGAAAGTGTTCTGGCGTGCGGT-GTGTGAAGAACTACTTTGGTTTATAAGTGG 1117045 Query 35293 CAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTC 35352 || || || || |||| | || || || || ||||||||||| | ||| | Sbjct 1117046 CAGCACTGATGCGAAAGTCCTACAAAACAAAAACATTCACATCTGGAATGGTAACGCTAG 1117105 Query 35353 GCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGT 35412 || ||||||||||| || | ||||| ||| | | ||| || || ||||| || | Sbjct 1117106 TCGTGAATTTTTGGATAGATGCGGGTTCAGCGACCGTGAAGAAGGTGACTTGGGGCCAAT 1117165 Query 35413 ATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGAT---TA 35469 ||||| || |||||||| |||||||| || ||||| || || | |||| || Sbjct 1117166 TTACGGTTTTCAATGGCGCCATTTTGGGGCACAATATCGCAC---TTGTCGCGATAGCTA 1117222 Query 35470 TACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGA 35529 | | |||| | ||||||||| | ||| | | ||| | | |||||| Sbjct 1117223 TGGTACGGAGGGAGTCGATCAATTGAAACAGATAATTAGGACAATAACTACAAATCCCAC 1117282 Query 35530 TGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCC 35589 ||| || | |||||| || | | |||||||| | ||| | | ||||| | || Sbjct 1117283 AGATCGACGTATGATTTTGTCCTCTTGGAATCCAGTAGATATACCAAAAATGGCCTTACC 1117342 Query 35590 TCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGT 35648 || ||||| || | || ||||| ||||| | ||| || ||||| || || | | Sbjct 1117343 GCCCTGCCA-TTGCTTGGCCCAATTCTATGTATCCAATAATGAGTTGTCATGTCAACTTT 1117401 Query 35649 ATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTC 35708 ||||||| || | ||| | ||| |||| || || || ||||| ||||| || | | Sbjct 1117402 ATCAGCGCAGTGCCGATATGGGGCTGGGTGTCCCATTTAATATAGCATCGTATGCATTAT 1117461 Query 35709 TGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTG 35768 | || | |||| ||| | | || || ||||| || |||||||| | |||| | Sbjct 1117462 TAACGTGTATGATTGCCCATTTAACCGGCCTTAAACCAGGCGAGTTTATACACACTACCG 1117521 Query 35769 GTGACGCACACATTTATAATACCCACATTGAGGTGTTAAAGAAGCAGTT 35817 |||| | |||||||| || || || || | |||||| |||| || Sbjct 1117522 GTGATACGCACATTTACAAAACGCATATCCAACCATTAAAGGAGCAATT 1117570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989553633687225