Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq451 122 9e-23 seq151 114 1e-20 seq383 107 2e-18 seq565 104 2e-17 seq161 102 8e-17 seq37 96.9 3e-15 >seq451 Length=246926 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| |||||||| || | || | || || ||||||||||| ||||||||| | Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| | || || ||||| | |||| |||||||| ||||| || Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| | || | ||||| | ||| | ||||| | ||| || || Sbjct 37889 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 37947 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | |||||||| || | |||||||| || || |||||| Sbjct 37948 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 37996 >seq151 Length=588408 Score = 114 bits (126), Expect = 1e-20 Identities = 465/724 (64%), Gaps = 13/724 (2%) Strand=Plus/Minus Query 153072 TTGACAACTTGAAATTCGCCCGACAATACACGTCTCAA--AAACAAATTACTGTGAAACG 153129 ||||| || |||||| || ||||||||||||| |||| | || ||| | | Sbjct 334746 TTGACGACAATAAATTCACCGGACAATACACGTCGTGTGTAAACGTTTGAC-GTGTAT-G 334689 Query 153130 GTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 153189 | || || |||||||| ||| || ||||| || || | || || ||||| || | Sbjct 334688 GCTCGAAAGACTCGTTATTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGTGCTA 334629 Query 153190 CAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGT-GACCAGTCC 153248 | ||||| ||||| || | ||| | | | |||| | |||| || | ||||| | | Sbjct 334628 CCAGCAAGGAATTGCGCACTCCATAACTCTTAATGT-CGTCTTTAAGAGCCGACCAATTC 334570 Query 153249 CATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTG 153308 |||| |||||| || || ||||| ||| ||||| | || |||| ||| || Sbjct 334569 CATAGATCAGTAGGCGTCTTATCCCACATATCATATTGAAGAATGCCTTTACTAACTGGA 334510 Query 153309 CTACCGGCAAACGTGCTATACGGCTC--ACTGTCAGACGCCAGTTTCAAACTGGCATCGA 153366 ||||| || | || || || | | ||| | |||| | |||| || || | Sbjct 334509 CTACCTTCATATGTTTCGTAAGGACCGTATTGTTTG--GCCAACTCACAACTAGCCTCTA 334452 Query 153367 GCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCA 153426 || ||| ||| | ||||| |||| ||||| || | | | ||| | ||||| Sbjct 334451 AAGCACCATAATATATGGTTTCAAAAATTTGTTTATTTAAGCGAGCAGCATCCTCGCTTT 334392 Query 153427 CGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGG 153486 | || || |||| | | | ||| || || || ||||| | ||| || || || | Sbjct 334391 CATAGGGGTAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTG 334332 Query 153487 GACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAA 153546 ||||||| || | |||| ||||||| || | | |||||| ||||| |||||| | Sbjct 334331 GACGATGACGTAAATTACATTTTTTGGCTTCCGGCAGCGGATAGTAATTGACGTCGATTA 334272 Query 153547 TTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACG 153606 | ||||| | | | | | | || | || | || || |||||| | Sbjct 334271 TCTTATTGAGGTTTCTTGTTATAAGCTTTGCAACTTCTTTCAGTTTCTGGAAATCATATT 334212 Query 153607 TTCCAT---TAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTT 153663 | || | | | | | || || ||||| || |||| |||||||| || ||| Sbjct 334211 GTTTATCTGTCGTCACGAACATATTCACCGCAATTGAGGCCAGATTGCAAACTGCTATTT 334152 Query 153664 CGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGC 153723 | || | | ||||| || ||||| | |||||| || ||||||||||| ||| Sbjct 334151 CCTCAGCCGACGTATATTCGACAATTTCTGTACACAAGTTACTGCATTTTATTGTGCCAA 334092 Query 153724 AATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGG 153783 ||| |||||| |||||||| |||||||| || ||||| |||||||| || || |||| Sbjct 334091 CATTCTGTTGATTACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGG 334032 Query 153784 TTTC 153787 | || Sbjct 334031 TCTC 334028 >seq383 Length=330124 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| || || || || | |||||| || ||||| || ||||| || Sbjct 43951 GCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGA 43892 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| ||||| ||||| ||| | || | || || ||||| ||||| Sbjct 43891 CAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGG 43832 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCC 139714 |||||||||||||| ||| |||||| |||| | |||| || | || || | ||| || Sbjct 43831 AATGCCTTCTTTGTC-TTGAATTTTTGCTTTAAC-GTTCTCAATAGTATCCGAGGGTTCT 43774 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || | || || || ||||| |||||||| || || ||||| Sbjct 43773 ACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || ||||||| ||||| || | || |||||||| || ||||||||||| Sbjct 43723 GCCCCCACGCAAACGCAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGA 43664 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || || | || || |||||| | || | ||| |||||||| || || Sbjct 43663 AAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGG 43604 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| |||| | |||| | | || | ||||| | ||||| | Sbjct 43603 GATTCCTTCCTTATC-TTGAATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAA 43545 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | || ||||| ||||| || || ||||| || ||||| Sbjct 43544 CCTCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCAT 43496 >seq565 Length=193464 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || || | || || ||||| || ||||| ||||| | Sbjct 150636 CCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGAC 150695 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | |||||| |||||| |||||| ||| || || || ||||| Sbjct 150696 AACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGA 150755 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||||||| ||| | | ||| | || || | | || || Sbjct 150756 ATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACT 150815 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || ||||| ||||| || ||||||||||| Sbjct 150816 TCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || || || | || ||||| || ||||| ||||||||| Sbjct 159360 GCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGA 159419 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| || || || || ||| | |||| ||||||||| || ||||| Sbjct 159420 CAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGG 159479 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| | || | |||| | | ||| | || || | || || | Sbjct 159480 AATACCTTCCTTGTCT-TGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAA 159538 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | || ||||| || || ||||||||||| |||||||| Sbjct 159539 CTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCAT 159587 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 139551 GCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGT 139610 |||| ||||| || | || || || ||||| ||||| ||||| || ||||| | Sbjct 150421 GCAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCAT 150480 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| | |||||| ||||| | || | ||| || || || ||||| || ||||| |||| Sbjct 150481 CTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150540 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||||||| ||| | | ||| | || || | || || || || | || | | Sbjct 150541 CTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGG 150600 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || ||||| ||||| || ||||||||||| Sbjct 150601 TTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 >seq161 Length=579164 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| ||||| ||||||||||| Sbjct 362224 CCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGAT 362283 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| | ||||||||||| | |||| |||||| ||||| ||||| Sbjct 362284 AAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 362343 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||||||||| || ||| |||| | || | | ||| | ||||||| ||||| || Sbjct 362344 ATGCCTTCTTTATC-CTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAAC 362402 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || ||||| || | ||||| || || |||||||| Sbjct 362403 TTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCAT 362450 >seq37 Length=1463180 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 153633 GCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCC 153692 ||||| || || | |||||||| || |||| || || | ||||| || ||||| Sbjct 1100027 GCAATTGAGGCTAGATTGCAAACTGCTATTTCTTCAGGTGATGTATATTCGACGATTTCT 1100086 Query 153693 GCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAA 153752 | |||||| || ||||||||||| ||| ||| |||||| ||||| || |||||| Sbjct 1100087 GTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACTTTTACGATTACAA 1100146 Query 153753 GCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTG 153793 || || ||||| |||||||| || || ||||| || |||| Sbjct 1100147 GCATCTTTGTAAAGCATGTAAGGAGTCCCGGTCTCTACTTG 1100187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496049149084000