Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq357 277 2e-69 >seq357 Length=326794 Score = 277 bits (306), Expect = 2e-69 Identities = 509/737 (69%), Gaps = 12/737 (2%) Strand=Plus/Plus Query 13664 TGACATAAAC--ACTTTATCACAAC-CTAGTTCTAATAGTAATCTATCAGCAATAAACTC 13720 ||| |||||| || || || || | |||||||||||| || | ||| |||| | | || Sbjct 32015 TGAAATAAACTTACCTT-TCCCACCTCTAGTTCTAATAACAAACGATCGGCAACATATTC 32073 Query 13721 AATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGT 13780 ||||||| | |||| || | ||||| || |||| | || || | | || Sbjct 32074 TATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGT 32133 Query 13781 TAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATC---TCATT 13837 ||||| |||||||| || || || ||| |||| || || || |||| || || Sbjct 32134 CAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTAT--TTCCAA-AATCCGTTCTTT 32190 Query 13838 AGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTC 13897 || | | | | ||||||||| ||||| |||||| ||||| || | ||| || Sbjct 32191 GCTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCACAGTGCAAGCCTTC 32250 Query 13898 ATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAA 13957 ||| | || | ||| || || || ||||| |||||||| | ||| ||||| |||| Sbjct 32251 ATCGCGTGATATCATTTCATTAGAGAACGTTAAACCTGGCATTATTCCACGTTTCTTTAG 32310 Query 13958 CCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14017 ||||||||| | ||| || ||| ||||||||| || || || ||||| || ||||| Sbjct 32311 CCAAAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGACGGCAGCGAAAGCTAT 32370 Query 14018 TAATCGTTCTCC-AAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtt 14076 | ||||| || ||| | | | | | |||||||| | |||||||| | | Sbjct 32371 AACACGTTCACCGAAATTAGCCGAATGCGAT-GATATCCAAGCTAGTGCCCATTCCGCCT 32429 Query 14077 tttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTAC 14136 | || |||| || |||||| ||||| |||||||||| ||||||||| ||||| | Sbjct 32430 TCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGATATTCCTTTTCTTTCTCAT 32489 Query 14137 TTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTA 14196 | || ||||| || |||||||| ||||||||||| ||||||| |||||||| || | Sbjct 32490 CTCTGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGTACATTTTCCATGGCAA 32549 Query 14197 TCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGG 14256 | ||||| ||||||||||| | ||||| | ||| || || | |||||| ||| Sbjct 32550 TTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCTCTTGGGAAAATCGTTCCA 32609 Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 | ||||| |||||||| |||||||| || |||||||| ||||| | || | ||||| Sbjct 32610 CTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAAACGTGTGAAATAA 32669 Query 14317 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTT 14376 | | | || |||| | | ||||||||| | ||| ||||| || || |||| Sbjct 32670 AATGACGTTCGCCATTACTTAACCGATTCCAATCGTCGATATCTTTAGAGAGGTCAACTT 32729 Query 14377 CATCAACTGTCCAAAAA 14393 | || | ||||||||| Sbjct 32730 CTTCTGCAGTCCAAAAA 32746 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 ||||| |||||||||||||| | ||||||||| |||||||| || ||||| || || | Sbjct 31861 ACGCCAATTTTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTCGTTTTGCCATCAATA 31920 Query 13632 GATATATTTTCCATAAAATCAAATGGATTT 13661 ||| || | ||| || |||||||||||| Sbjct 31921 CTTATTTTATTCATGAATTCAAATGGATTT 31950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479713638143000