Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq565 132 4e-26 seq161 116 3e-21 seq383 96.9 3e-15 seq451 95.1 9e-15 >seq565 Length=193464 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || ||||| | || |||||||| | || |||||| || | |||||||||||| Sbjct 159132 GCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGA 159191 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || ||| |||| |||||||||||||| ||||| ||||| || |||||||| | || Sbjct 159192 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGG 159251 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || || | ||||| | ||| ||||||| || |||||| Sbjct 159252 GATTCCTTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGAC 159311 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || || || | ||||| || ||||||||||| Sbjct 159312 TTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || ||||| | || |||||||| | || |||||| || | |||||||||||| Sbjct 158904 GCCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGA 158963 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || ||| |||| |||||||||||||| ||||| ||||| || |||||||| | || Sbjct 158964 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGG 159023 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || || | ||||| | ||| || ||| || |||||| Sbjct 159024 GATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGAC 159083 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| || || | ||||| || ||||||||||| Sbjct 159084 TTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCAT 159131 Score = 107 bits (118), Expect = 1e-18 Identities = 166/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || ||||| | || |||||||| | || |||||| || | ||| |||||||| Sbjct 159360 GCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGA 159419 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || ||| |||| |||| ||| ||||||||||||||||| || || || || | || Sbjct 159420 CAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGG 159479 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || ||| |||| || | | | || || | || || Sbjct 159480 AATACCTTCCTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAAC 159539 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAA 43117 || | || |||||||| || |||| ||||| || || ||||||||||| |||| Sbjct 159540 TTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT-TTAA 159594 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||||| | ||| |||||||||| || || || || | ||||| || || Sbjct 150863 GCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGA 150922 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||| || | | ||||| |||||||| ||||| ||||| || |||||||| | || Sbjct 150923 GAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGG 150982 Query 43002 CACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 ||||| ||||| || ||| | | | ||| || | ||| || ||| | ||| Sbjct 150983 GACACCCTCTTTATCT-TGAATTTTAGT-TTTAACATTCTCAATAGTATCGGATGGCTCA 151040 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || || | || ||||||||||| || | || ||||| || || |||||||| Sbjct 151041 ACCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAAGATCTGCATTTT 151093 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || |||| | || |||||||| | || |||||| || | ||||||||| || Sbjct 156479 CCACCGCGCAAACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAT 156538 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| |||| |||||||||||||| ||||| ||||| || |||||||| | || Sbjct 156539 AAAGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGG 156598 Query 43003 ACACCTTCTTTTTC 43016 | ||||| || || Sbjct 156599 ATTCCTTCCTTATC 156612 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | ||||| || | ||| |||||||| | |||||||| ||| Sbjct 145766 CCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 145825 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| || | || |||||||||||||| || ||||| || |||||||| || | || Sbjct 145826 AATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGA 145885 Query 43003 ACACCTTCTTTTTC 43016 | |||||| || || Sbjct 145886 ATACCTTCCTTGTC 145899 >seq161 Length=579164 Score = 116 bits (128), Expect = 3e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | || ||||| || || || || | || ||||||||||| || || || Sbjct 362259 CTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAA 362318 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTC 43036 |||||| || |||||||| | || | |||||||| || ||| || | ||||| Sbjct 362319 AATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATC-CTGAATTTTGGCCTTGACAT 362377 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| |||||| || ||| || || | || |||||||| || || |||||||| | Sbjct 362378 TTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAA 362437 Query 43097 CAAAAATTTGCATTTT 43112 |||||||||||||||| Sbjct 362438 CAAAAATTTGCATTTT 362453 >seq383 Length=330124 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| || || | |||||||||||||| || |||||||| | ||| || || || Sbjct 43951 GCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGA 43892 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || |||| || || ||||||||||| || ||||||||||| | || Sbjct 43891 CAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGG 43832 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || || |||| || | ||| || || | || || Sbjct 43831 AATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTAC 43772 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| || || | |||||| ||||| || ||||| Sbjct 43771 TTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 >seq451 Length=246926 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 ||||| | ||| | ||| || ||||| | ||| |||||||||||||| || | || Sbjct 37784 AACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATCT 37843 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||||||| || || || ||||||||||| || || |||| || | || ||||| || Sbjct 37844 TCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTC- 37902 Query 43018 CTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 ||| ||| |||| || | | | ||||| | ||||| || | || || || Sbjct 37903 CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGT 37962 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || || ||||| ||||| |||||||| ||||| || Sbjct 37963 CTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 37998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381358468178910