Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq451 141 9e-29 seq565 140 3e-28 seq383 123 3e-23 seq151 111 2e-19 seq161 98.7 1e-15 seq37 91.5 1e-13 >seq451 Length=246926 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| |||||||| || | ||| | ||| ||||||||||| || || |||||| | Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||||| | ||| || ||||| | |||| |||||||| ||||| || Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||| || ||||| | ||| | ||||||| |||||| || Sbjct 37889 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 37948 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | |||||||| || | |||||||| || || |||||| Sbjct 37949 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 37996 >seq565 Length=193464 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || ||||| | ||| |||||||| |||||||||||||| | Sbjct 150636 CCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGAC 150695 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| | ||||| |||||| |||||| ||| || || || ||||| Sbjct 150696 AACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGA 150755 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | ||| | || |||| | ||||||| Sbjct 150756 ATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACT 150815 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || ||||| ||||| || ||||||||||| Sbjct 150816 TCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 129 bits (142), Expect = 6e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 142971 GCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGT 143030 |||| |||||||| | ||| ||||| ||||||||||||||||| || ||||| | Sbjct 150421 GCAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCAT 150480 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| | ||||| ||||| | || | ||| || || || ||||| || ||||| |||| Sbjct 150481 CTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150540 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | |||||| ||| | | ||| | || |||| ||||||||||| | ||| | | Sbjct 150541 CTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGG 150600 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || ||||| ||||| || ||||||||||| Sbjct 150601 TTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || ||||| | || || || || || || ||||||||| Sbjct 159132 GCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGA 159191 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| |||||| | |||||| |||||| |||||| |||||| ||||| || || Sbjct 159192 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGG 159251 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || |||||| || | | || | ||||| | || || || Sbjct 159252 GATTCCTTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGAC 159311 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | |||||||| ||||||||||| ||||| |||||||| Sbjct 159312 TTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || ||||| | || || || || || || || |||||| Sbjct 159360 GCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGA 159419 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| |||||| ||||| || || ||| | |||| ||||||||| || ||||| Sbjct 159420 CAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGG 159479 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| || ||| | | ||| | || || | ||||| || Sbjct 159480 AATACCTTCCTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAAC 159539 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | || ||||| || |||||||||||||| |||||||| Sbjct 159540 TTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCAT 159587 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| ||||| | || || || || || || ||||||||| Sbjct 158904 GCCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGA 158963 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| |||||| | |||||| |||||| |||||| |||||| ||||| || || Sbjct 158964 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGG 159023 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || |||||| || | | || | || || | || || || Sbjct 159024 GATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGAC 159083 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | || || || ||||||||||| ||||| |||||||| Sbjct 159084 TTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCAT 159131 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| || || |||| |||||||| ||||||||||||||||| | Sbjct 145766 CCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 145825 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||||| | |||||| ||||| | || | ||| || || || ||||| Sbjct 145826 AATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGA 145885 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 145886 ATACCTTCCTTGTC 145899 >seq383 Length=330124 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| || || ||||| | |||||||| ||||| || || || || Sbjct 43951 GCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGA 43892 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||| || || ||||| ||| | || | || || ||||| ||||| Sbjct 43891 CAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGG 43832 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| ||||||| ||| | | || | || |||| ||||||||| Sbjct 43831 AATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTAC 43772 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | || || || ||||| |||||||| || || ||||| Sbjct 43771 TTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 >seq151 Length=588408 Score = 111 bits (122), Expect = 2e-19 Identities = 289/438 (66%), Gaps = 7/438 (2%) Strand=Plus/Minus Query 156777 AACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGG 156836 |||| ||||| | ||| ||| ||| | |||||| |||||||||||| || || | | Sbjct 334463 AACTAGCCTCTAAAGCACCATAATATATGGTTTCAAAAATTTGTTTATTTAAGCGAGCAG 334404 Query 156837 CAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGC 156896 || | ||||| | || || |||| | || | ||| || || || ||||| | || Sbjct 334403 CATCCTCGCTTTCATAGGGGTAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGC 334344 Query 156897 CAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGG--TAGAA 156954 | || ||||| |||||||| || | |||| ||||||| || || | || | ||| | Sbjct 334343 CTATACCGATTGGACGATGACGTAAATTACATTTTTTGGC--TTCCGGCAGCGGATAGTA 334286 Query 156955 ATTGCGATCAATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGTGTGCAATAG 157014 |||| || || || ||||| | | || | | || | || | || | Sbjct 334285 ATTGACGTCGATTATCTTATTGAGGTTTCTTGTTATAAGCTTTGCAACTTCTTTCAGTTT 334226 Query 157015 TTGAAAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATT 157071 || |||||| | |||| | | | | |||| || ||||| || || ||||| Sbjct 334225 CTGGAAATCATATTGTTTATCTGTCGTCACGAACATATTCACCGCAATTGAGGCCAGATT 334166 Query 157072 ACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCA 157131 || || || |||| || | || ||||| || ||||| | |||||| || ||||| Sbjct 334165 GCAAACTGCTATTTCCTCAGCCGACGTATATTCGACAATTTCTGTACACAAGTTACTGCA 334106 Query 157132 TTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACAT 157191 |||||| || ||| |||||| |||||||| || ||||| || ||||| | ||| Sbjct 334105 TTTTATTGTGCCAACATTCTGTTGATTACTTTTGCGATTACAAGCATCTTTGTAAAGCAT 334046 Query 157192 GTACGGTGTGCCGGTTTC 157209 ||| || || ||||| || Sbjct 334045 GTAAGGAGTTCCGGTCTC 334028 >seq161 Length=579164 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||||||||| ||||| | || | | ||||| | |||||||||| Sbjct 362254 GTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCA 362313 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || | |||| |||||| ||||| ||||| ||||||||||| || |||||| || Sbjct 362314 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 362373 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| | || || ||||| | ||| | || ||||| || | ||| Sbjct 362374 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 362433 Query 143168 TTTACGAATATTTGCAT 143184 || || || |||||||| Sbjct 362434 TTAACAAAAATTTGCAT 362450 >seq37 Length=1463180 Score = 91.5 bits (100), Expect = 1e-13 Identities = 426/672 (63%), Gaps = 11/672 (2%) Strand=Plus/Plus Query 156551 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 156610 || ||||| ||||||||||| || ||||| || || | ||||| ||||| || Sbjct 1099520 GGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCT 1099579 Query 156611 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCC 156670 || ||||| ||||| || | ||| || ||| || | ||| | ||||| | | Sbjct 1099580 ACCAGCAAAGAATTGCGCACTCCATAACTTTTAATGTCGTCTTTAAGAGCCGACCAATTC 1099639 Query 156671 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 156730 |||| ||| || ||| ||||| ||| ||||| | || |||| || | Sbjct 1099640 CATAGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACGGGA 1099699 Query 156731 CTACCGGCAAACGTGCTATAAGGCTCACTAACAGAT--GCCAGTTCGTAACTGGCCTCGA 156788 ||||| || | || || || | || | | |||| ||| |||| || || | Sbjct 1099700 CTACCTTCATAGGTTTCGTACGGACCGT--ACTGTTTGGCCAATTCACAACTAGCTTCTA 1099757 Query 156789 GCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCA 156848 ||| ||| ||| | |||||| |||||||||||| || | | ||| ||||| Sbjct 1099758 AGGCACCATAATATATTGTTTCAAAAATTTGTTTATTTAAGCGTGCAGCACTTTCGCTTT 1099817 Query 156849 CGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGG 156908 | || || |||| | || | ||| || || || ||||| | || | || || | Sbjct 1099818 CATAGGGATAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACACCTAAACCAATTG 1099877 Query 156909 GACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGG--TAGAAATTGCGATCAAT 156966 ||||||| || | |||||| ||| | | || | | || | ||| ||||| ||| || Sbjct 1099878 GACGATGACGAAAATTAGACTTTCTGGT--TTCCGACAGCGGATAGTAATTGACATCGAT 1099935 Query 156967 AATTTTATTCAAACTATCCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAA 157026 || || || | | || | | ||| | || | | | ||||||||| | Sbjct 1099936 TATCTTGTTGAGGTTTCTTGTTATAAGCTTGGCAACTTCTTTGAGTTTGTGAAAATCATA 1099995 Query 157027 AG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGT 157083 |||| | | | | |||| | ||||| || |||||||| || || || | Sbjct 1099996 TTGTTTATCTGTGGTCACGAACATATTCAACGCAATTGAGGCTAGATTGCAAACTGCTAT 1100055 Query 157084 TTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCC 157143 ||| || || | ||||| || ||||| | |||||| || ||||||||||| || Sbjct 1100056 TTCTTCAGGTGATGTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCC 1100115 Query 157144 GCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCC 157203 ||| |||||| ||||| || || ||||| || ||||| | |||||| || || || Sbjct 1100116 AACATTCTGTTGATTACTTTTACGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTCCC 1100175 Query 157204 GGTTTCGGCTTG 157215 ||| || |||| Sbjct 1100176 GGTCTCTACTTG 1100187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506999221256400