Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq161 145 6e-30 seq565 138 8e-28 seq451 129 4e-25 seq17 104 2e-17 seq383 95.1 9e-15 >seq161 Length=579164 Score = 145 bits (160), Expect = 6e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || | ||| || || ||||||||||| ||||| || | | | | | ||||| Sbjct 362242 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 362301 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| |||||| | |||||||||||||| || ||||| |||||||| || | Sbjct 362302 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 362361 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| |||| || || ||| | || || || || ||||| ||||| Sbjct 362362 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 362421 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || || |||||||| |||||||||||||| ||| Sbjct 362422 CCAGTAAGAGTTTTAACAAAAATTTGCATTTTT 362454 >seq565 Length=193464 Score = 138 bits (152), Expect = 8e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | || | || ||| ||||| | ||| || || || || || ||||||||| Sbjct 158903 TGCCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGG 158962 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | ||||||| |||||||||||||| | |||||||||||||| || | Sbjct 158963 ACAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGG 159022 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | |||||||| || || |||||| ||| ||| | || ||||||||| | || | Sbjct 159023 GGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGA 159082 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | ||||| || ||||||||||| |||| ||||| || ||||||||||| Sbjct 159083 CTTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCAT 159131 Score = 131 bits (144), Expect = 1e-25 Identities = 163/216 (75%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || |||||||| | ||||| || ||||||||||||||||| | ||| || | | Sbjct 150423 AATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAG--ACAATGTGCGGCCAT 150480 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| || |||||||||||| | || ||||| |||||||| ||||| ||||| |||| Sbjct 150481 CTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150540 Query 15270 C-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAAT 15327 | | ||||||| || || |||| || ||||| | || |||||| || || || || Sbjct 150541 CTTGGATTTTTGCT-TTAACGTTTTCGATAGTATC-CGATGGTTCTACTTCCAAAGTGAT 150598 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || |||| |||||| ||||| |||||||| Sbjct 150599 GGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | ||||| ||||| |||||||||||||| | | | ||||| Sbjct 150651 AATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCT 150710 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC- 15270 || || ||||| ||||| | |||||||| |||||||| ||||| ||||| ||||| Sbjct 150711 TCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCT 150770 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 | ||||||| || || |||| || ||||| |||||| || || || ||||| Sbjct 150771 TGGATTTTTGCT-TTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGGT 150829 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || |||| |||||| ||||| |||||||| Sbjct 150830 TTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | || | || || ||||| | ||| || || || || || ||||||||| Sbjct 159131 TGCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGG 159190 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | ||||||| |||||||||||||| | |||||||||||||| || | Sbjct 159191 ACAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGG 159250 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | |||||||| || || |||||| ||| || | || || || ||| | || | Sbjct 159251 GGATTCCTTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGA 159310 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | |||||||| ||||| || || |||| ||||| || ||||||||||| Sbjct 159311 CTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Score = 107 bits (118), Expect = 1e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | ||| | |||||| ||||| || || || ||||| || |||||||| || Sbjct 150862 TGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAG 150921 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | | ||| || ||||||||||| | |||||||||||||| || || Sbjct 150922 AGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTG 150981 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | | || ||||| || |||||| | || ||| | || || |||||| || | Sbjct 150982 GGACACCCTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAA 151041 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 | || ||||| || ||||| || |||| || || || || || ||||| || ||||| Sbjct 151042 CCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAAGATCTGCATTTTAAAAAAT 151100 Score = 102 bits (112), Expect = 6e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | || | || || ||||| | ||| || || || || || || |||||| Sbjct 159359 TGCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGG 159418 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | ||||||| | ||| ||||| || | ||||||||||| ||||| | Sbjct 159419 ACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAG 159478 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| ||| ||| || ||| |||| || ||||| ||| | Sbjct 159479 GAATACCTTCCTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAA 159538 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 | || || || || ||||| || || | |||||||| || |||||||| ||| ||||| Sbjct 159539 CTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTTTTAAAAT 159597 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 15235 CAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTC 15294 |||||||||||| || || |||||||| || || |||||| ||| ||| | || Sbjct 158775 CAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTC 158834 Query 15295 TATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15354 ||||||||| | ||| || ||||| || ||||||||||| |||| ||||| || || Sbjct 158835 AATGGTATCGGAAGGTTCGACTTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAA 158894 Query 15355 AATTTGCAT 15363 ||||||||| Sbjct 158895 AATTTGCAT 158903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| | || || ||||| | || || || || || || |||||||| | Sbjct 156479 CCACCGCGCAAACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAT 156538 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||| |||||||||||||| | |||||||||||||| || || Sbjct 156539 AAAGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGG 156598 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCG 15304 |||||||| || || |||||| ||| ||| | || ||||||||| Sbjct 156599 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCG 156646 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || || ||||| || || || ||||||||||||||||| | ||| || | |||| Sbjct 145784 ACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAG--ACAATGTGCGGCCATCTT 145841 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-A 15271 | ||||||||||||||| | || ||||| |||||||| ||||| ||||| ||||| Sbjct 145842 CCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTT 145901 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATC 15303 | ||||||| || || |||| || ||||| Sbjct 145902 GGATTTTTGCT-TTAACGTTTTCGATAGTATC 145932 >seq451 Length=246926 Score = 129 bits (142), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| ||| | || || | ||| | ||||| |||||||| || || |||||| Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGG-- 37826 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | ||||| ||||| || |||||| | ||||| ||||| |||||| || Sbjct 37827 ACAATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTG 37886 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||||| |||||||| ||| ||| |||||| |||| || || || ||| | Sbjct 37887 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGA 37946 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || | || ||||| || || || || |||||||||||||| |||||||| Sbjct 37947 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 37998 >seq17 Length=1967559 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 |||||| ||||| || || | | ||||||||||| || | |||| | | || Sbjct 595082 TAAAACCAAATGGAGAGTCGCGCCCTTTTGTATGTTATAGTTCGTTAGCGTGCAACTATC 595023 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 |||||| || ||||| || || ||||| || |||| | |||||| || || || || Sbjct 595022 TTCTAACTGCTTGCCGGCATAAATCAATCGGCGTTGATTTGGTGGAATACCGTCCTTATC 594963 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| ||||| || | |||| || |||||| | ||| |||||||| |||| ||| Sbjct 594962 CTGAATCTTGCTTTTAATCTTTTCAATAGTATCGGTCGGTTCGACATCTAAAGTAAGGGT 594903 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAA 15372 || || || | ||||| |||||||| ||||| ||| |||| Sbjct 594902 ATTGCCCGTTAACGTTTTCACAAAAATCTGCATTTTTCAAAA 594861 >seq383 Length=330124 Score = 95.1 bits (104), Expect = 9e-15 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 15133 TCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC 15192 |||||| || | | | ||| || ||||| || || || || ||||| || || || || Sbjct 43954 TCTGCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTC 43895 Query 15193 GCTTAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCG 15250 | | || || | ||||| | || || || || | || || || ||||| || Sbjct 43894 --TGACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCT 43837 Query 15251 TTTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATT 15309 ||||| ||||||||||| |||||| ||| || || | || || ||||| Sbjct 43836 GGAGGAATGCCTTCTTTGTCTTGAATTTTTGCT-TTAACGTTCTCAATAGTATCCGAGGG 43778 Query 15310 TTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| ||||| || |||||||||||||||| |||||||||||| || ||||| Sbjct 43777 TTCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362168628328695