Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq383 109 5e-19 seq565 89.7 4e-13 seq161 89.7 4e-13 >seq383 Length=330124 Score = 109 bits (120), Expect = 5e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 18802 ATTTTATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAAT 18861 |||||| | | ||||| || | | |||||||| || | |||||| |||||||| || Sbjct 43963 ATTTTAGAATCTGCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGAT 43904 Query 18862 ATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTG 18921 ||| || || | || || | | || |||||||| ||||| ||| |||| | | ||| Sbjct 43903 ATTATAGTCTGACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTG 43844 Query 18922 CTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATC 18981 ||||| || | ||| |||||||| |||||| ||| || | | | |||||| Sbjct 43843 TTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATC 43784 Query 18982 GCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||| | || |||||||||||||| |||||||| ||||| || ||||| Sbjct 43783 CGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 >seq565 Length=193464 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| | || |||| ||||| || |||||||| |||||||||||||| | | Sbjct 158905 CCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGAC 158964 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || |||| |||| ||||| || ||| | || | | || ||||| ||| Sbjct 158965 AAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGG 159024 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || |||||| || || | | | |||||| |||||| | Sbjct 159025 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGACT 159084 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||||||||| || || |||||||| ||||||||||| Sbjct 159085 TCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCAT 159131 >seq161 Length=579164 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || ||||||||||| || || ||||||| | || | || ||| Sbjct 362242 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 362301 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | |||||||| || |||| | | || ||||| || | ||| ||||| || | Sbjct 362302 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 362361 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | | | ||| ||| |||||| ||| | ||||| ||||| Sbjct 362362 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 362421 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || | |||||| ||||||||||||||||| Sbjct 362422 CCAGTAAGAGTTTTAACAAAAATTTGCATTTT 362453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414560699008630