Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq451 136 3e-27 seq161 129 4e-25 seq565 123 2e-23 seq383 96.9 2e-15 >seq451 Length=246926 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||| || |||||||| | ||| ||||| || |||||||| ||||| ||||| ||| Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || || | || ||||||||||||||| || || || ||||||||||| | || Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || ||||| || |||| |||||| ||| || ||||| ||||| || Sbjct 37889 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 37948 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| || || || ||||| || |||||||| ||||| ||||| || Sbjct 37949 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 37998 >seq161 Length=579164 Score = 129 bits (142), Expect = 4e-25 Identities = 160/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| ||||| |||||||| |||||||| || ||||| || ||| | | || ||| Sbjct 362242 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 362301 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || ||| || || |||||||| || || | || ||||||||||| || | Sbjct 362302 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 362361 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| |||||| || | ||| |||| ||| || ||| Sbjct 362362 ATTTTGGCC---TTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTT 362418 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 || || ||||||||||| || ||||||||||| ||||| Sbjct 362419 TTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTTAT 362456 >seq565 Length=193464 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || ||||| || || ||||| ||||| ||||| || || ||| ||| Sbjct 159379 ACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCTTCC 159438 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||| || ||| || |||||||||||||| | || || ||||| || || | Sbjct 159439 AGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGA 159498 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || ||| || || || |||| ||| |||| ||| || ||||| Sbjct 159499 ATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTG 159558 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || | ||||||||||| |||||||| ||| Sbjct 159559 CCAGTTAATGTTTTTACGAAGATTTGCATTTTT 159591 Score = 116 bits (128), Expect = 2e-21 Identities = 158/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||||||||||||| || ||||| ||||| |||||||||||||| || | | Sbjct 150648 CGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCG 150707 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || ||||| || |||||| ||| || ||||| || ||||| | || || ||||| || Sbjct 150708 TCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTG 150767 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| || || || | || || |||| ||| Sbjct 150768 TCTTGGATTTTTGC---TTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTG 150824 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || |||||||| || | |||||| || || ||||||||| Sbjct 150825 ATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATG 150863 Score = 111 bits (122), Expect = 1e-19 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || ||||| || || ||||||||||| ||||| || || ||| ||| Sbjct 158923 ACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCC 158982 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || ||| ||| || |||||||| || || | ||| || ||||| || || | Sbjct 158983 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGA 159042 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || | | ||| || ||| || | || || | ||| || ||| Sbjct 159043 ATTTTAGCC---TTGACATTCTCAATGGTATCGGAAGGCTCGACTTCTAAAGTGATGGTT 159099 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || | ||||| ||||||||||||||| Sbjct 159100 TTACCAGTCAATGTTTTGACGAAAATTTGCATG 159132 Score = 105 bits (116), Expect = 4e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||||||||| || || |||||||||||||| ||| || || ||| ||| Sbjct 156497 ACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGATAAAGTGCGTCCGTCTTCC 156556 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||||| || ||| ||| || |||||||| || || | ||| || ||||| || || Sbjct 156557 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATC 156612 Score = 105 bits (116), Expect = 4e-18 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || ||||| || || ||||||||||| ||||| || || ||| ||| Sbjct 159151 ACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCC 159210 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || ||| ||| || |||||||| || || | ||| || ||||| || || | Sbjct 159211 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGA 159270 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || | | ||| |||||| || | || || | || || || Sbjct 159271 ATTTTAGCC---TTGACGTTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTC 159327 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || | ||||| ||||||||||||||| Sbjct 159328 TTGCCAGTCAATGTTTTGACGAAAATTTGCATG 159360 Score = 104 bits (114), Expect = 1e-17 Identities = 154/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 33156 GCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGT 33215 |||| || ||||||||||| || || |||||||| |||||||||||||| || | | Sbjct 150421 GCAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCAT 150480 Query 33216 CATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT-- 33273 | ||||| || || ||| || |||||||| || ||||| | || || ||||| || Sbjct 150481 CTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150540 Query 33274 -TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 || | | | || ||| || ||| || || || |||| || |||| ||| | Sbjct 150541 CTTGGATTTTTGC---TTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGA 150597 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | |||||||| || | |||||| || || |||||||| Sbjct 150598 TGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 >seq383 Length=330124 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 || |||| || |||||||| || |||||||| ||||| || ||||| || | | | | Sbjct 43713 AAACGCAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGG 43654 Query 33212 TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271 || ||||||||||||||| ||| |||||||| ||||| || | || || ||||| Sbjct 43653 CCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCC 43594 Query 33272 TTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || || ||| ||| || | | ||| ||||| || | ||| || | ||| Sbjct 43593 TTATCTTGAATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTG 43534 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTA 33374 || ||||| || || | || || ||||| || ||||| |||| Sbjct 43533 ATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTTTA 43491 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || ||||||||||| | || || || ||||| ||||| || || ||||| || | Sbjct 43938 CGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCA 43879 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| || ||| ||||| || || || || | || ||||||||||| Sbjct 43878 TCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTG 43819 Query 33275 TCGCTAATCGCCTGTTTTACTGTT-TGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || ||| || |||| ||| | ||| || || ||||| || || | ||| || Sbjct 43818 TCTTGAAT-TTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGAT 43760 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || || | ||||||||| || || |||||| Sbjct 43759 GGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 43723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318768295180710