Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq565 107 1e-18 seq161 107 1e-18 seq383 102 6e-17 seq451 98.7 7e-16 >seq565 Length=193464 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || ||| || ||||||||||||||| || || | || ||| Sbjct 159379 ACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCTTCC 159438 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||| || || ||||| ||||| ||||||||||| |||| | |||||| || ||| | Sbjct 159439 AGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGA 159498 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||| || | | | |||||||| ||| || || || | || || ||||| Sbjct 159499 ATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTG 159558 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || || || || |||||||| Sbjct 159559 CCAGTTAATGTTTTTACGAAGATTTGCAT 159587 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||| | ||| ||||| || || || ||||| || || | || Sbjct 150651 AATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCT 150710 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| |||||||| ||||| ||||| || || ||||| |||| | |||||| || ||| Sbjct 150711 TCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCT 150770 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| ||| || | | | |||||| | || || || || | || || ||| Sbjct 150771 TGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGGTT 150830 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || ||||| || ||||||||||||||| Sbjct 150831 TTTCCAGTCAAAGTTTTAACAAATATTTGCATG 150863 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || ||| || |||||||| |||||| || || | || ||| Sbjct 158923 ACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCC 158982 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| ||||| ||||| || || | || | ||||| |||||| | Sbjct 158983 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGA 159042 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | ||| ||||| | ||||| || || | || || |||||| Sbjct 159043 ATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGACTTCTAAAGTGATGGTTTTA 159102 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || || || || || ||||||||| Sbjct 159103 CCAGTCAATGTTTTGACGAAAATTTGCATG 159132 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || || ||||| | ||| || ||||| || || ||||| ||| || |||| Sbjct 150423 AATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCT 150482 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| ||||| || || || || || || || ||||| |||| | |||||| || ||| Sbjct 150483 TCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCT 150542 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| ||| || | | | |||||| | || || || || | || || ||| Sbjct 150543 TGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGGTT 150602 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||| || |||||||||||||| Sbjct 150603 TTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || ||| || |||||||| |||||| || || | || ||| Sbjct 159151 ACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCC 159210 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| ||||| ||||| || || | || | ||||| |||||| | Sbjct 159211 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGA 159270 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | ||| || || | ||||| || || | || || || || Sbjct 159271 ATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTG 159330 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || || || || || ||||||||| Sbjct 159331 CCAGTCAATGTTTTGACGAAAATTTGCATG 159360 >seq161 Length=579164 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| ||||| || |||||||| ||| ||| |||| ||||||||||| || || || Sbjct 362259 CTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAA 362318 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||| ||||| || || |||| | ||||||||||| |||||| ||||| | Sbjct 362319 AATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATT 362378 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||| || | ||||| || || | ||||| ||||| || || | ||| || || Sbjct 362379 TTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAAC 362438 Query 44110 AAATATTTGCAT 44121 ||| |||||||| Sbjct 362439 AAAAATTTGCAT 362450 >seq383 Length=330124 Score = 102 bits (112), Expect = 6e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 |||||||||||| ||||| || ||||| |||||||| || || || |||| Sbjct 43936 TAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCATC 43877 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 |||| || || || ||||| || || || || || || |||| | |||||||| || Sbjct 43876 TTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTGTC 43817 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | ||||||| ||| || | ||| |||||| | || || || || | || || || Sbjct 43816 TTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGT 43757 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||||| || ||||| || ||||| || |||||| Sbjct 43756 TTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 43723 >seq451 Length=246926 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||| ||| | ||||| | ||||| ||| ||||||||||||||||||||| Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| || |||| |||||||| ||||| || || ||||| ||||||||||| | || Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || ||||| || ||| || ||| || | | | ||| || | || || || Sbjct 37889 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 37948 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || |||| || || ||||| || ||||| Sbjct 37949 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 37995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354767244374460