Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq383 105 6e-18 seq161 104 2e-17 seq565 102 7e-17 >seq383 Length=330124 Score = 105 bits (116), Expect = 6e-18 Identities = 171/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 19963 AAATATATTTTATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTT 20022 |||| |||||| || | ||||| || | | ||||||||||| || |||||||| || Sbjct 43969 AAATGAATTTTAGAATCTGCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTT 43910 Query 20023 TTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAG 20082 ||| || || || || || || |||||||| || || || ||| |||| | Sbjct 43909 TTGGATATTATAGTCTGACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAA 43850 Query 20083 CCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAAC 20142 | ||||||||| || | |||||||||||| ||||||| ||| || | ||| Sbjct 43849 GCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAAT 43790 Query 20143 AGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAAT 20202 || ||| ||||| ||| | || |||||||| || ||||| ||||| ||||| || Sbjct 43789 AGTATCCGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGAT 43730 Query 20203 TTGCAT 20208 ||||| Sbjct 43729 CTGCAT 43724 >seq161 Length=579164 Score = 104 bits (114), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || | || || || ||||||||||| ||||| | ||| ||||||| Sbjct 362242 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 362301 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || |||| | | |||||||| || | ||||||||| || | Sbjct 362302 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 362361 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| || ||| ||| || ||||| ||||| |||||| Sbjct 362362 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 362421 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAACTCTTATAAATGA 20228 || || | ||||| ||||||||||||||||||| | || || |||||| Sbjct 362422 CCAGTAAGAGTTTTAACAAAAATTTGCATTTTTATATTC-TAAAAATGA 362469 >seq565 Length=193464 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| || ||||| | ||| ||||| ||||||||||||||||| || || ||| Sbjct 150422 CAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATC 150481 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||| |||||||| || |||| | | |||||| || || | ||||| ||||| Sbjct 150482 TTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTC 150541 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 |||||| ||| || | | | || ||| ||||| ||||| || ||||| Sbjct 150542 TTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGGT 150601 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| || ||||| ||||| ||||| ||||||||| Sbjct 150602 TTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 150635 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | | ||| |||||||| | ||| |||||||| |||||||||||||| Sbjct 150634 TTCCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAG 150693 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || || |||||||| ||||| || ||| | || | | |||||| || | Sbjct 150694 ACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAG 150753 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| ||||| |||||| ||| || | | | || ||| | ||| Sbjct 150754 GAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTA 150813 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || |||||||| || ||||| ||||| ||||| |||||||| Sbjct 150814 CTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| | || || || || || || ||||||||| || || |||||| Sbjct 158923 ACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCC 158982 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||||||||| ||| | || | | |||||||| ||| | ||||| || || | Sbjct 158983 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGA 159042 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| | |||| ||| || ||| | || |||||||| Sbjct 159043 ATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGACTTCTAAAGTGATGGTTTTA 159102 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| |||||||| ||||||||||| Sbjct 159103 CCAGTCAATGTTTTGACGAAAATTTGCAT 159131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| | || || || || || || ||||||||| || || |||||| Sbjct 159151 ACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCC 159210 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||||||||| ||| | || | | |||||||| ||| | ||||| || || | Sbjct 159211 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGA 159270 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| | ||| ||| || ||| | ||| ||||| ||| Sbjct 159271 ATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTG 159330 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| |||||||| ||||||||||| Sbjct 159331 CCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419574952642995