Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq451 172 1e-37 seq357 161 2e-34 seq161 154 3e-32 seq383 149 1e-30 seq565 140 7e-28 seq17 100 7e-16 >seq451 Length=246926 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||||||||| |||||||| ||||||||||| || || | || | ||| ||||| Sbjct 37787 ACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATCTTCC 37846 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||| |||||||| ||||| | | || || || || || ||||| ||||| |||||| Sbjct 37847 AATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 37906 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| |||||||||||||| | || || ||||| ||||| || || || ||||| Sbjct 37907 ATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTG 37966 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || ||||||||||| |||||||| ||| Sbjct 37967 CCCGTTAGGGTTTTTACAAAAATCTGCATATTG 37999 >seq357 Length=326794 Score = 161 bits (178), Expect = 2e-34 Identities = 363/535 (68%), Gaps = 9/535 (2%) Strand=Plus/Minus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||| | || ||||||||||||| ||||||||| || || ||| | || | |||| Sbjct 32759 AGGCGGAAGCATCTTTTTGGACTGCAGAAGAAGTTGACCTCTCTAAAGATATCGACGATT 32700 Query 268812 GGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAG 268871 |||| |||| | ||| | ||||| || | || | || |||||||| | Sbjct 32699 GGAATCGGTTAAGTAATGGCGAACGTCATTTTATTTCACACGTTTTGGCTTTTTTTGCGG 32640 Query 268872 TTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTC 268931 |||||||| ||||| || ||| |||| || || | |||||||| || || Sbjct 32639 CATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAA 32580 Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991 | ||||| | || ||||| || || || || || || |||||| | || || || |||| Sbjct 32579 CCGAAGCACGTTGCTTTTATGGGTTTCAAATTGCCATGGAAAATGTACACTCGGAAATGT 32520 Query 268992 ACAGTCTATTAATAGATACTTATAT-AGATGATAACAACGAAAAGAAAAGACTATTTTCT 269050 | ||| || | || || || ||||| ||| ||| | || |||||| || |||||| | Sbjct 32519 ATAGTTTACTTATCGAAACATATATCAGA-GATGAGAAAGAAAAGGAATATCTATTTAAT 32461 Query 269051 TCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATA-- 269107 | || |||| | ||| | || | || || | |||||||| || |||||| Sbjct 32460 GCCATTGAGA-CAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCACTAGCTTGGATATC 32402 Query 269108 AACG-ATAGCGCGCCTTACGGAGAAAG-GTTAGTTGCTTTTGCCGCTGTAGAAGGTATAT 269165 | || || || || ||| ||| | |||| | ||||| || || || |||||||||| Sbjct 32401 ATCGCATTCGGCTAATTTCGGTGAACGTGTTA-TAGCTTTCGCTGCCGTCGAAGGTATAT 32343 Query 269166 TCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGAT 269225 ||||| ||| || || | || |||||| | |||||| | || | |||||||| | Sbjct 32342 TCTTTAGTGGGAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTT 32283 Query 269226 TAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280 |||| |||||||| ||| ||||| | || ||||| || ||||| || || || Sbjct 32282 TAACGTTCTCTAATGAAATGATATCACGCGATGAAGGCTTGCACTGTGAATTTGC 32228 >seq161 Length=579164 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | || || || || || || || || ||||| || |||| ||| | || ||| Sbjct 362239 AGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCT 362298 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| ||||| ||||| | | |||||||| ||||| || |||||||||||| Sbjct 362299 TCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCC 362358 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || |||||||| | || ||| ||| || || || | |||||||| Sbjct 362359 TGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTT 362418 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || |||||||| ||||| ||||| || |||||||| Sbjct 362419 TTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTT 362453 >seq383 Length=330124 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| ||| || || || |||||||| || ||||| || || ||||| | || || Sbjct 43707 AGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCC 43648 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| |||||||||||||||| | ||| ||||| || || |||||||| ||||| Sbjct 43647 TCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCT 43588 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| ||||| || | || || || || ||||||| || ||||| Sbjct 43587 TGAATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTT 43528 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| | ||| || || || ||||||||||| Sbjct 43527 TTGCCAGTCAATGTCTTCACGAAGATCTGCATTTT 43493 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || ||||||||||| || | || | || ||||| || || || || Sbjct 43920 GTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCATCTTCCAGCTGCTTACCG 43861 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||||| | ||||||||| ||||| || |||||||| || ||||| |||||||| Sbjct 43860 GCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTA 43801 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| |||||||| |||| || || || ||||| || | ||| Sbjct 43800 ACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTT 43741 Query 104543 TTTACAAATATCTGCAT 104559 |||||||| |||||||| Sbjct 43740 TTTACAAAGATCTGCAT 43724 >seq565 Length=193464 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || || || || ||||||||||| || || || | || | |||||| Sbjct 158920 AGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCT 158979 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| |||||||| || | | |||||||| || || |||||||| ||||| Sbjct 158980 TCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 159039 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || ||||| || | ||||||| ||| || || |||| || || || Sbjct 159040 TGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGACTTCTAAAGTGATGGTT 159099 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | |||||| || || || ||||| Sbjct 159100 TTACCAGTCAATGTTTTGACGAAAATTTGCAT 159131 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || || || || |||||||||||||| || || | || | |||||| Sbjct 159376 AGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCT 159435 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || || |||||||| | | || || || ||||| || ||||| || || Sbjct 159436 TCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCT 159495 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| ||||| |||||||| | ||||| ||||| || || | || ||||| Sbjct 159496 TGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTT 159555 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| | ||||||||| || || |||||||| Sbjct 159556 TTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 159590 Score = 136 bits (150), Expect = 9e-27 Identities = 173/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 104325 TATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||||| ||||| || | || | | ||| | ||| ||||| ||||||||||| || || Sbjct 150626 TATTTGCATTCCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTT 150685 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 || ||||| | || | |||||||| | |||||||||||||| || | | |||||| Sbjct 150686 GTAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTG 150745 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 || ||||| || ||||| || || || || |||||||| || ||||| | ||||| Sbjct 150746 GTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGA 150805 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | |||||| || | || || || || ||||| | ||||| |||||||| ||||| Sbjct 150806 CGATTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| | ||| |||||||||||||| || |||||||| || || | || | ||| | || Sbjct 150887 ATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCATTTTCCAACTG 150946 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| |||||||| || | | |||||||| || || | || |||||||| ||||| || Sbjct 150947 TTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTTATCTTGAATTTT 151006 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 | ||| ||||| || | |||||| || || ||||| | || ||||| || ||||| Sbjct 151007 AGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTTCCAGT 151066 Query 104536 AAGTGTTTTTACAAATATCTGCATTTT 104562 | ||| || || || ||||||||||| Sbjct 151067 CAATGTCTTCACGAAGATCTGCATTTT 151093 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || || || || ||||||||||| || || || | || | |||||| Sbjct 159148 AGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCT 159207 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| |||||||| || | | |||||||| || || |||||||| ||||| Sbjct 159208 TCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 159267 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || || || || | || ||| ||| || || |||| || || ||| Sbjct 159268 TGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTC 159327 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | |||||| || || || ||||| Sbjct 159328 TTGCCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Score = 123 bits (136), Expect = 6e-23 Identities = 119/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| ||||| || || ||||||||||| || ||||||| ||| | |||||| Sbjct 156494 AGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGATAAAGTGCGTCCGTCT 156553 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| |||||||| || | | |||||||| || || |||||||| ||||| Sbjct 156554 TCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 156613 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 ||||| || || || ||||| || | ||||||| Sbjct 156614 TGAATTTTAGCCTTGACATTCTCAATGGTATCG 156646 >seq17 Length=1967559 Score = 100 bits (110), Expect = 7e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || || || ||||||| | ||| || | || ||||||| || || || ||| |||| Sbjct 595057 TTTTGTATGTTATAGTTCGTTAGCGTGCAACTATCTTCTAACTGCTTGCCGGCATAAATC 594998 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA-TTTTC 104490 | | |||||| || || || || || |||||||||||||| ||||||| ||||| Sbjct 594997 AATCGGCGTTGATTTGGTGGAATACCGTCCTTATCCTGAATCTT-GCTTTTAATCTTTTC 594939 Query 104491 TACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | |||||| | ||||| || |||| |||| || || || || | ||||| ||||| Sbjct 594938 AATAGTATCGGTCGGTTCGACATCTAAAGTAAGGGTATTGCCCGTTAACGTTTTCACAAA 594879 Query 104551 TATCTGCATTTT 104562 ||||||||||| Sbjct 594878 AATCTGCATTTT 594867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151363068260660