Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq414 86.0 6e-12 >seq414 Length=269728 Score = 86.0 bits (94), Expect = 6e-12 Identities = 186/274 (68%), Gaps = 11/274 (4%) Strand=Plus/Plus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299 || || ||||||||||| || || || || ||||| |||| | ||| | |||| Sbjct 242383 CCCGTCGAACCGAATCCTCCTTCACCACGTTCAGTGTCTTCCA---GTTTATCTACTTGC 242439 Query 5300 AC---TGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTA 5356 | | | || | |||| || ||||| || | || || || | ||| || |||| Sbjct 242440 TCCAATTCCGGATAGAATATACGCTCGCAAATCAATTGGGCAATGCGGTCGCCACGCTTA 242499 Query 5357 ACCTCAAAGTCGCTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAGT 5414 | ||||| || | | ||| || || || || || || | |||||||||||| | Sbjct 242500 ATATCAAAATCAACAT--CGGAATGATTGAAAAGAACAACACCCAAATTGCCTCGGTAAT 242557 Query 5415 CTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTG 5474 |||| || || || ||||| ||||| |||||||| | || || | |||||| |||| Sbjct 242558 CTTCATCAATCACACCAGCTCCCACATCGATAAAATTCTTCCAAGCCAAGCCGGATCGTG 242617 Query 5475 GTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTT 5508 |||||| ||| ||||| | ||| ||||| ||| Sbjct 242618 GTGCTACGCGACCGTAAGAGCCA-CTGGGAACTT 242650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447736995472400