Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq1006 120 8e-23 >seq1006 Length=36943 Score = 120 bits (132), Expect = 8e-23 Identities = 230/337 (68%), Gaps = 4/337 (1%) Strand=Plus/Minus Query 21570 CCAAGCATTTGCATGGTTCCACCAACGCCTACGATAACTTCGGTAGTGAACCTATCCTGT 21629 || ||||||||||| | ||| || |||||| |||||||| ||| | || |||| || Sbjct 10302 CCGAGCATTTGCATAGCACCATTAATGCCTACAATAACTTCTGTAATATACTTATCTTGA 10243 Query 21630 CCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGCCT 21689 || |||| || |||||||||||||| | || | ||||| | ||| || | ||| ||| Sbjct 10242 CCATTTTGGTCTTGCCATTTTCTTGTTTGTAAGCTCCCTTCGATATATACTTGAGATCCT 10183 Query 21690 TTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGCCAC 21749 ||||| | |||||| | ||| ||||| || | ||| || || || || | |||||| Sbjct 10182 TTTCGTAAATATTCTCCGGCTATTTCAGCTAATTTTCCAAAAATAACTACTCTGTGCCAT 10123 Query 21750 TCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAACT 21809 || || | || || ||||| || | ||||| ||||| ||| || || |||| Sbjct 10122 TCGGTTTTTTCTTTGATTTCTCCGGTATTTTTATCGCGCCAACTTTCAGATGTTGCAAGC 10063 Query 21810 GTAAGGTTTGCAAATGCCGTTCCTGATGGTGAA--TATCTGATTTCTGGATCATGCCCAA 21867 || | |||| || || |||| || ||| || | | ||||||| ||||| | Sbjct 10062 GTGATATTTGTAACGGCACTTCC--ATTAGGAATGTAGCGTACATCTGGATTTTGCCCTA 10005 Query 21868 GGCGACCAATAATGATCACCTTATTTACGCCTCTGCT 21904 | ||||| | || || ||||| | ||||| || Sbjct 10004 AATGTCCAATTAAAATGACTTTATTAATTCCTCTACT 9968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124812450154950